Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq53101 136 6e-27 seq24986 109 8e-19 >seq53101 Length=121849 Score = 136 bits (150), Expect = 6e-27 Identities = 207/293 (71%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 149642 CGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGACCGTCGATCTGCTCGACGTTGAACAC 149701 ||| || |||| | | |||||| | || |||| ||| ||||||||||||| ||||| || Sbjct 55510 CGGCGCCGGCTGCCGATAGAAGTGGTCAGGCAATCCGGCGATCTGCTCGACATTGAAGAC 55451 Query 149702 CAGATAGGACTTCAGGAACGGGATCATCCGCTCGACGTCCTTGCCGTTCGAGTCCTTCTC 149761 | ||||| |||||| |||||||| || ||||| || ||| || ||| |||| Sbjct 55450 CGAATAGGTCTTCAGAAACGGGATGTCGCGTTCGACCTCGCCGCCATTGCCGTCGGTCTC 55391 Query 149762 GGTCTTCTTGAACTTGGAGGCGTAGACGATCAGTTCGGACTT--CTCGCCCTTGCGGACC 149819 ||| ||||| | || |||| || | ||| || | ||||||||||||||| Sbjct 55390 AGTCCGGGTGAACCGGCTCGCATAGATGAC--GGTCGCACCTGACTCGCCCTTGCGGACG 55333 Query 149820 TGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTTGGGTTGGTGTAACCGCGC 149879 ||| || | || || | || || ||| | |||||||||||||| |||| |||| ||| Sbjct 55332 TGAGCATCAAGCTCGATCGCCTGTTTGAACGTCATCCAGGTTGGCGAGGTGAAACCCCGC 55273 Query 149880 TCCTGCGCGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCC 149932 | |||| | | ||| || || | |||||| || ||| ||||| | | ||| Sbjct 55272 GCGAGCGCTTCCGACCAGAGCAGCAGCACGTTCATGCCGCTGTAGGGTTCGCC 55220 >seq24986 Length=52538 Score = 109 bits (120), Expect = 8e-19 Identities = 198/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 149649 GGCTTCTGGTAGAAGCGCTCGGGCAGACCGTCGATCTGCTCGACGTTGAACACCAGATAG 149708 |||||||| ||||| || ||||| |||||||||||||| |||||||| || Sbjct 3852 GGCTTCTGATAGAAATGCGTCGGCAGGTTCTCGATCTGCTCGACATTGAACACTGTGTAA 3911 Query 149709 GACTTCAGGAACGGGATCATCCGCTCGACGTCCTTGCCGTTCGAGTCCTTCTCGGTCTTC 149768 | || ||||||||||| ||| ||||| || |||| | || | || |||||| Sbjct 3912 GTTTTGAGGAACGGGATATCCCGTTCGACTTCGCCGCCGCGCTCATCGGTTTCAGTCTTC 3971 Query 149769 TTGAACTTGGAGGCGTAGACGATCAGTTCG--GACTTCTCGCCCTTGCGGACCTGACCAC 149826 ||||| | |||||||| || ||| ||| | ||||| |||||||| || |||| Sbjct 3972 GTGAACCGGCTGGCGTAGATGA-CAG-TCGATCCCGACTCGCTTTTGCGGACATGGCCAC 4029 Query 149827 CCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTTGGGTTGGTGTAACCGCGCTCCTGCG 149886 |||| || | | ||| ||| ||||||||||| | | | | |||||||| || || Sbjct 4030 CCAGTTCGATCGATTGTTTGAAGGTCATCCAGATCGATGATGCGAAACCGCGCGCCAGCC 4089 Query 149887 CGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCC 149932 | | | ||| || | | |||||| || || ||||| ||| ||| Sbjct 4090 CTTCCGACCAAAGCAACAGCACGTTCATGCCAGTGTATGGCTCGCC 4135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709218212212160