Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq53101 138 2e-27 seq24986 116 5e-21 >seq53101 Length=121849 Score = 138 bits (152), Expect = 2e-27 Identities = 210/297 (71%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 148412 CGCCGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACATTGAA 148471 || ||| || |||| | | |||||| | || |||| ||| ||||||||||||||||||| Sbjct 55513 CGTCGGCGCCGGCTGCCGATAGAAGTGGTCAGGCAATCCGGCGATCTGCTCGACATTGAA 55454 Query 148472 CACCAGATAGGACTTCAGGAACGGGATCATCCGTTCGACGTCCTTGCCGTTGGCGTCCTT 148531 ||| ||||| |||||| |||||||| |||||||| || ||| ||| |||| | Sbjct 55453 GACCGAATAGGTCTTCAGAAACGGGATGTCGCGTTCGACCTCGCCGCCATTGCCGTCGGT 55394 Query 148532 CTCGGTCTTCTTGAACTTCGAGGCGTAGACGATCAGTTCGGACTT--CTCGCCCTTGCGG 148589 ||| ||| ||||| || |||| || | ||| || | ||||||||||||| Sbjct 55393 CTCAGTCCGGGTGAACCGGCTCGCATAGATGA--CGGTCGCACCTGACTCGCCCTTGCGG 55336 Query 148590 ACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCG 148649 || ||| || | || || | || || ||| | ||||||||||| || |||| | || Sbjct 55335 ACGTGAGCATCAAGCTCGATCGCCTGTTTGAACGTCATCCAGGTTGGCGAGGTGAAACCC 55276 Query 148650 CGCTCCTGGGCGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCCG 148706 ||| | | || | | ||| || || | |||||| || ||| ||||| | | |||| Sbjct 55275 CGCGCGAGCGCTTCCGACCAGAGCAGCAGCACGTTCATGCCGCTGTAGGGTTCGCCG 55219 >seq24986 Length=52538 Score = 116 bits (128), Expect = 5e-21 Identities = 200/287 (70%), Gaps = 4/287 (1%) Strand=Plus/Plus Query 148422 GGCTTCTGGTAGAAGCGCTCGGGCAGGCCGTCGATCTGCTCGACATTGAACACCAGATAG 148481 |||||||| ||||| || |||||| ||||||||||||||||||||||| || Sbjct 3852 GGCTTCTGATAGAAATGCGTCGGCAGGTTCTCGATCTGCTCGACATTGAACACTGTGTAA 3911 Query 148482 GACTTCAGGAACGGGATCATCCGTTCGACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTC 148541 | || ||||||||||| ||||||||| || |||| | || | || |||||| Sbjct 3912 GTTTTGAGGAACGGGATATCCCGTTCGACTTCGCCGCCGCGCTCATCGGTTTCAGTCTTC 3971 Query 148542 TTGAACTTCGAGGCGTAGACGATCAGTTCG--GACTTCTCGCCCTTGCGGACCTGACCAC 148599 ||||| |||||||| || ||| ||| | ||||| |||||||| || |||| Sbjct 3972 GTGAACCGGCTGGCGTAGATGA-CAG-TCGATCCCGACTCGCTTTTGCGGACATGGCCAC 4029 Query 148600 CCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGG 148659 |||| || | | ||| ||| ||||||||||| ||| | | | |||||| || | Sbjct 4030 CCAGTTCGATCGATTGTTTGAAGGTCATCCAGATCGATGATGCGAAACCGCGCGCCAGCC 4089 Query 148660 CGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTAGCGCTGGCCG 148706 | | | ||| || | | |||||| || || ||||| ||| |||| Sbjct 4090 CTTCCGACCAAAGCAACAGCACGTTCATGCCAGTGTATGGCTCGCCG 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700865740616320