Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq54032 102 8e-17 seq36931 84.2 2e-11 seq56171 82.4 8e-11 >seq54032 Length=526453 Score = 102 bits (112), Expect = 8e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 ||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||| Sbjct 69740 TCGGGAAGTAGCGCAGCCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGAGGTTCAA 69681 Query 15461 ATCCTGTATTCCCGAC 15476 ||||| | |||||||| Sbjct 69680 ATCCTCTCTTCCCGAC 69665 >seq36931 Length=650932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 26450 GTAGCTCAGTGGCAGAGCCGCCGACTGTTAATCGGCTGGTCGCTGGTTCAAATCCAGCCT 26509 ||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||||||| Sbjct 561324 GTAGCTCAGCGGTAGAGCATCCGACTGTTAATCGGATGGTCGCTGGTTCGAATCCAGCCC 561383 Query 26510 TGGGAG 26515 ||||| Sbjct 561384 GGGGAG 561389 >seq56171 Length=386068 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 26909 AATGCGCAAGTGGCGGAATTGGTAGACGCCCAGGTTTTAGGTACCTGTGCCCTAGTGG-C 26967 ||||| || |||||||||||||||||||| | || || |||| || ||| | || || | Sbjct 303422 AATGCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCC 303481 Query 26968 GTGAAGGTTCAAGTCCTTTCTTGCGCATCA 26997 |||||||||| ||||||||| || ||| || Sbjct 303482 GTGAAGGTTCGAGTCCTTTCCTGGGCACCA 303511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516113673648000