Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq27440 168 2e-37 seq54491 131 5e-26 >seq27440 Length=426762 Score = 168 bits (186), Expect = 2e-37 Identities = 485/741 (65%), Gaps = 4/741 (1%) Strand=Plus/Plus Query 45477 ACGGCGTGGAGAAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGC 45536 ||||||| ||||| |||||||| || || ||||| | ||||| ||||||| ||| Sbjct 328866 ACGGCGTCGAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAA 328925 Query 45537 TGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCT 45596 ||||||| || || | ||| |||||| | ||||||| || | ||| | Sbjct 328926 TGCGCTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGG 328985 Query 45597 CGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGG 45656 ||||| | |||| ||||||||||| | || ||||| || || | || ||| | Sbjct 328986 CGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCG 329045 Query 45657 AGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCT 45716 | || || || || || |||||||||||||| |||| || |||||||||||||| ||| Sbjct 329046 ACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCT 329105 Query 45717 ACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGG 45776 | ||| || ||||| || ||| | | ||||| | ||||||| || || Sbjct 329106 ATGGCCATCAGTGGCGCTCATGGCCGGCCCCGGACGGCCGCAGCATCGACCAGATCGCCA 329165 Query 45777 CGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGA 45836 ||| | | ||||||||||| ||| ||||||| || || | || ||||||| Sbjct 329166 ACGTCGTGGACATGATCAAGCGCAATCCGGACTCGCGCCGCCTGATCGTCTCGGCGTGGA 329225 Query 45837 ACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACG 45896 | ||| || | | | ||| | |||| || || |||| | || ||||| |||| Sbjct 329226 ATCCGGCCGAGGTCGACAAGATGGCGCTGCCGCCGTGCCATTGCCTGTTCCAGTTCTACG 329285 Query 45897 TCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGAT 45956 |||| || ||| | |||| || | | ||||| || | ||| || || || Sbjct 329286 TCGCCAACGGCAAGCTGTCCTGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCG 329345 Query 45957 TGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCAACAATGCGAC 46015 |||| || |||||||| ||| ||||| | || ||| ||||| || || || Sbjct 329346 TGCCCTTCAACATCGCCTCCTACTCGCTGCTCAC-CATGATGGTGGCGCAGGTCACCGGT 329404 Query 46016 CTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTG 46075 || | |||||| || | | |||||||| ||| | || || || ||| Sbjct 329405 CTGAAGCCCGGCGATTTCGTGCATTCGTTCGGCGACGCGCATCTCTATTCCAACCACCTG 329464 Query 46076 GAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAA- 46134 || || ||||| || ||||| || |||| |||||| || ||||| | | ||||| Sbjct 329465 GAGCAGGCGAAGCTCCAGCTCACCCGCGCGCCGCGAGCGTTGCCGGTGATGCGCATCAAC 329524 Query 46135 ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGA 46194 | || | | | | ||||| || | ||||||||| ||| | |||||||| || Sbjct 329525 CCTGAGGTCAAGGAC-ATCTTCTCCTTCCGCTTCGAGGATTTCGAACTCGTCGGCTACGA 329583 Query 46195 CCCGCACCCGGCGATTAAGGC 46215 ||||||||| || ||||| Sbjct 329584 TCCGCACCCGCACATCAAGGC 329604 >seq54491 Length=272697 Score = 131 bits (144), Expect = 5e-26 Identities = 388/585 (66%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 45428 GAGAAAACTATGAAACAATATCTAGACTTGCTGCAA-GACATCTTAGAAAACGGCGTGGA 45486 || ||| | ||||| || |||| ||| |||| | || ||| || | ||||| ||| Sbjct 166628 GATAAACCCATGAACCAGTATCACGACCTGCTCGAGCGAATTCTCAGCGA-CGGCGCGGA 166570 Query 45487 GAAAGAA-GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTA 45545 ||||| || || || || || || || ||||| |||||||| | |||| ||||||| | Sbjct 166569 -AAAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCA 166511 Query 45546 A-CTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATT 45604 | || ||| || || ||| | | ||||| || ||| ||| | || ||| | Sbjct 166510 ATCTGGCATCG-GGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCCATCGTA 166452 Query 45605 TATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGT 45664 |||||||||| |||||| | ||||| || || | || || | || | || Sbjct 166451 CATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGC 166392 Query 45665 GTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCG 45724 || |||| ||||| || ||||| || | || ||||||||||||||| ||||||| || Sbjct 166391 GTCTCGATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCG 166332 Query 45725 CAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTT 45784 || ||||| |||||| | | | ||||| | ||||||| ||| | || | Sbjct 166331 CAGTGGCGCTCGTGGCCTGCGCCGGACGGCCGCAGCATCGACCAGATTTC--AAATC-TG 166275 Query 45785 AAGGAAATCAAGCGC---AACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTG 45841 | || || | ||| || ||| | || || || || | || || |||||||| Sbjct 166274 ATCGAGATGATCCGCAAAAATCCGGATTCACGTCGCCTGATCGTCAGTGCGTGGAATCCC 166215 Query 45842 GCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCG 45901 || | | | | ||| | |||| || ||||| | | || ||||| || ||||| Sbjct 166214 GCCGACGTCGACAAGATGGCGCTGCCTCCGTGTCACTGCCTGTTCCAGTTCTATGTCGCT 166155 Query 45902 AATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCG 45961 || || ||||| ||| | | |||||||| | || |||||| || ||||| Sbjct 166154 AACGGAAAATTGTCCTGCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCG 166095 Query 45962 TTTAACATCGCTAGCTATGCGCTGTTGACACAT-ATGGTTGCCCA 46005 || |||||||| |||||||||| |||| ||| ||||| || || Sbjct 166094 TTCAACATCGCGTCCTATGCGCTGCTGAC-CATGATGGTGGCGCA 166051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157644106005788