Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq53101 264 5e-66 seq24987 181 4e-41 seq24986 161 4e-35 seq47259 120 1e-22 >seq53101 Length=121849 Score = 264 bits (292), Expect = 5e-66 Identities = 916/1381 (66%), Gaps = 71/1381 (5%) Strand=Plus/Plus Query 54863 CACGAGTTCCGCAAACTCGACTTCGCGACGCAGCAGGGCAACATC-AAGGGCATCGACCC 54921 || ||||||||||||||| ||| ||||| || | | | || | |||||| |||| || Sbjct 47643 CAGGAGTTCCGCAAACTCTCCTTTGCGAC-CAATATGTCGACGTTGAAGGGCGTCGATCC 47701 Query 54922 GGCCGGCTCGCAACGCGCGATGGACCTGTTCATGAAGGCGCAGTACCTGCGCTCGAAGAA 54981 | ||||||||| |||||| ||| |||||| | ||| ||| ||| | | |||||| Sbjct 47702 GAACGGCTCGCAGCGCGCGTGGGATCTGTTCGTCAAGTCGCGCTACGTCGACATGAAGAA 47761 Query 54982 GCCGGGCCGCGCGCTCGTCGCCGCGTCGGGCACGCCGATCACGAACACGATGGGCGAGCT 55041 |||||||| |||||||| ||| || ||||| |||||||| ||||| | |||||| | Sbjct 47762 CCCGGGCCGTGCGCTCGTGCTCGCCTCCGGCACCCCGATCACCAACACCCTCGGCGAGAT 47821 Query 55042 GTTCACGGTGCAACGCT-TCTTCCAGCCCGAGCAGATGGCCGAGGACGGTCTGGACACCT 55100 |||| |||| ||||||| ||| | ||| || |||| || ||| || | Sbjct 47822 GTTCTCGGTCCAACGCTATCTCGGATATGTGGCAT-TGCTCGAGCGTGGCCTGCACGAAT 47880 Query 55101 TCGACGCGTGGGCGA--ACCAGTACGGCGACGTCGTGGCGGGCTTCGAGCAGAACGCGGC 55158 ||||||| |||||| ||| | ||| |||||| | | | |||| | | | | | Sbjct 47881 TCGACGCCTGGGCGTCGACC--TTCGGTGACGTCTCGACCGAGCTCGAACTGCAGCCATC 47938 Query 55159 GGGCGGCTATGAAGTCGTCAGCCGCTTCGCGAAGTTCCAGAACGTGCCGGAGCTGATGCG 55218 ||| || | |||| ||||||||||| ||| ||||| || |||||||| || Sbjct 47939 GGGTAAATACAAGCCCGTCTCCCGCTTCGCGACCTTCGTCAACGTTCCCGAGCTGAT-CG 47997 Query 55219 CCGCGTGC-GCTCGTTCATGGACATCCTGACGAGCTCGCAGCTCT-CGC-AGTACGTCGA 55275 | || | |||| || ||| || ||| | | || | | | ||| ||||||| | Sbjct 47998 CGATGTTCCGCTCCATCGCCGACGTCGTGATG--CCCGAGGATTTGCGCCAGTACGTGAA 48055 Query 55276 CCGCCCGGCGATCGATGGCGGCGGCCGTCAGGTCATGGTCACGCCGGAGCCGTTCG--GC 55333 ||||||||| |||| | || ||| || | ||| | |||||| || || Sbjct 48056 GGTGCCGGCGATCTCGACCGGCAGACGGCAGATCCT---CACAGCAAAGCCGTCCGCTGC 48112 Query 55334 TATAAGGCAT-ACCAGAAGGCGCTCGAACAGCGCATCACCGCGATCCGTAACCGCAAGGG 55392 | | || | |||||| | ||||| ||||||||| |||||| | ||| | | Sbjct 48113 ATTCAAGCGTTACCAGACGCTGCTCGGCGAGCGCATCAAGGCGATCGAGGAGCGCGACCG 48172 Query 55393 GCCGCCCTCGAAGGGGCAGGACATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCCGC 55452 ||||| | || | |||||| || || || ||| | || ||||| | | || Sbjct 48173 TGCGCCCGAGCCCGGCGACGACATCCTCTTGTCGGTCATCACCGATGGCCGCCACGCGGC 48232 Query 55453 GATCGACATGCGCTTCGTCGA-CCCGACCGCGCCGAGCGACCCGAACAGCAAGCTGAACC 55511 ||||||| ||||| | ||||| |||||| | | | ||| | ||| ||||||||||| Sbjct 48233 GATCGACCTGCGCCTGGTCGATCCCGACAATGACAA-CGAGGCCGACAACAAGCTGAACC 48291 Query 55512 AGATGCTCG---ACGCCGTG---ATCGCCGACTATCACGCGGCGTCCGACTTCGAGTATT 55565 || | ||| ||||| | ||| | | || || | | | || | || Sbjct 48292 AGCTCGTCGGCAACGCCTTCCGCATCTGGGGCGATACTGCCGAGCGCACCTATG----TT 48347 Query 55566 CG-ACGAACGGCAAGG---TCGACCCGATCAAGGGCGCGTCGCACATCATCTTTACCGAC 55621 || || |||||||| |||| | | | |||||| |||| || ||||| | ||| Sbjct 48348 CGCACCGACGGCAAGCCGTTCGAACTGCCC---GGCGCGGCGCAGATGATCTTCTCGGAC 48404 Query 55622 ATCGGGCTCGGCGAGCAGTCGGCGAAGAACCGCGGCTTT--GACATGAAGGCGTGGAT-C 55678 |||| | | ||| |||| |||| |||||||| | | | | || ||||| | Sbjct 48405 CTCGGCACCATC-AGC-GTCGA-GAAGTCGCGCGGCTTCTCGGCCT-ATCGC-TGGATTC 48459 Query 55679 GAAAAGCGTCTGGTCGAGGGCGGCGTGCCGCGCGAGC-AGATCGCGTTCATGCGCGA--- 55734 | | | | || ||| ||||||||| || | | ||||| ||||||| || Sbjct 48460 GCGACGAG-CTCGTCCGCATGGGCGTGCCG-GCATCCGAAATCGCCTTCATGCAGGATTT 48517 Query 55735 CAACAAGGAGCACGCCAAGAAGGAGCGCCTGTTCGCGGACATGCGCGAGGGCAAAAAGCG 55794 ||| ||| | | || |||| |||||||||||| ||| |||||| ||||| || Sbjct 48518 CAAGAAGTCGGAGGC---GAAGCAGCGCCTGTTCGGCGACGTGCGCGCCGGCAAGGTCCG 48574 Query 55795 CATCCTGATCGGCGGCAAGGACA---TGGAAACCGGCGTGAACGTGCAGAAGCGCCTCTA 55851 | |||||||||| || ||||| ||| |||||||| |||| |||| ||||||| | Sbjct 48575 CTTCCTGATCGGGAGCTCGGACACGATGGGGACCGGCGTCAACGCGCAGCTGCGCCTCAA 48634 Query 55852 CAGCGAGGAGCATCTGGACGCGCCGTGGTTCCCGGCGTCCGTCGAGCAGCGCGAGGGGCG 55911 | | | || || |||| ||||||| | ||| || |||||||||||||||| || Sbjct 48635 GGCCTTGCATCACCTCGACGTGCCGTGGCTGCCGTCGCAGATCGAGCAGCGCGAGGGCCG 48694 Query 55912 CATCATCCGCCAGGGCAACCAGAACAAGCAGGTGCGCATCCGCGCGTGGGCGACGAAGGG 55971 |||| | ||||||||||||||| || | |||| ||| ||| | ||||| |||| Sbjct 48695 CATCGTGCGCCAGGGCAACCAGCACGACGAGGTCGATATCTTCGCCTATGCGACCGAGGG 48754 Query 55972 C-AGCTACGA-CAGCACGATGTGGGGGATGAACGCCCGCAAGGCGCGGTTCATCGAACAG 56029 | ||| ||| ||| ||||||| || |||| |||||||| || ||||||| | Sbjct 48755 CTCGCT-CGATGCGCA-GATGTGGCAGAACAACGAGCGCAAGGCCCGCTTCATCGCCGCG 48812 Query 56030 GCCCTCAACGGCGACGACAGCG-TGCGCTCGCTCGAGGACGTGTCTGA-AGCGTCGGC-- 56085 || || ||||||| || || | ||| |||||||||| || || ||| | | Sbjct 48813 GCTCTTTCCGGCGAC-ACTTCGATCCGCAGGCTCGAGGACATGGGCGAGAGCCAGGCCAA 48871 Query 56086 ---GTTCGACATGGCCGCCGCGCTGGCGTCGGGCGACGAGCGCTATCTGAAGATGGCCGG 56142 ||||| |||||| ||| | |||||||| ||| ||| || ||| |||||| Sbjct 48872 CCAGTTCGCGATGGCCAAGGCGATCGCGTCGGGTGACCCGCGGCTGATGCAGAAGGCCGG 48931 Query 56143 CCTGAAGGCCGACGTCGAGCGCCTGGAGCGTCTGAGCTACGCGCACCACGACGACCAGAA 56202 || |||||||| ||| ||| || || || ||| || ||| || ||| || ||| | Sbjct 48932 GCTCGAGGCCGACATCGCGCGGCTCGAACGCCTGCGCGCCGCCCATATCGATGATCAGCA 48991 Query 56203 C 56203 | Sbjct 48992 C 48992 Score = 192 bits (212), Expect = 2e-44 Identities = 663/1012 (66%), Gaps = 59/1012 (6%) Strand=Plus/Plus Query 53669 GACGTCATCGACGCGCTCGGCACATCGATCTACGAGGACCCGGCAAAGGGCT---GGCAG 53725 || ||| ||| || |||||||| |||||| | || ||||| | || | ||||| Sbjct 46428 GATGTCGTCGCCGAGCTCGGCAGCGCGATCTTCCGCGATCCGGCTGACGGTTCATGGCAG 46487 Query 53726 ACGTCCGACGCGTACCTGTCGGGCAACGTCGTGCG-CAAACTCGCCGAGGCGCAGGCCGC 53784 ||| | ||||| || ||||| ||| ||| | ||| ||| ||| ||| | || || Sbjct 46488 ACGGCGGACGCCTATCTGTCAGGCCCCGT-GCGCGACAAGCTCAAAACGGCAGAAGCGGC 46546 Query 53785 CGCGCGCAG-CGACCGCA-AGTATCAGCGCAACGTCGAGGCGCTGCTGGCCGTGCAGCCG 53842 || |||| |||| ||| |||| ||||||| ||| ||||||| | ||| ||||| Sbjct 46547 GGC-CGCACTCGAC-GCAGAGTACGAGCGCAATGTCACTGCGCTGCAAGGCGTCCAGCCC 46604 Query 53843 AAGCCG--CTCGGCCCGACCGACATCACGGTGAAGCTGGGCCAGAACTGGATTCCGGCCA 53900 |||| ||| ||||| |||||||||||| | ||| ||| | ||||| |||||| Sbjct 46605 --GCCGATCTCAGCCCGTCCGACATCACGGCGCGGCTCGGCGCGCCATGGATCCCGGCCG 46662 Query 53901 GCGACGTCGCCGCGTTCGCGAGCGAGGCACTGAACGAGAAGATCGACGTCTCCTACAACT 53960 ||| ||| ||| |||| | ||| | || || | ||| | || | ||| Sbjct 46663 CCGATATCGTCGCTTTCGTCAAGGAGACGATGGGCGCCGACATCAAAATCCACCACATGC 46722 Query 53961 CGCGGCTCGGCTCGTGGTCCGCCGAG-CAATCCGGCTCGAACTATTCGGAGTTCAACACC 54019 | ||||| |||||| | | ||| || || ||||| || || | | ||| Sbjct 46723 CCGAGCTCGCTTCGTGGACGGTGGAGGCACGCCAGCTCGG-CTGGATGGCGGCCGGCACG 46781 Query 54020 -CCGAA---------GAT-----GAACGCCGGCCAGATCCTCGACGCGGTGCTGAACAAC 54064 ||||| ||| | | || ||| || |||||| || | |||||||| | Sbjct 46782 TCCGAATGGGGCACCGATCGGCGGCATGCGGGCGAGCTCCTCGCCGACGCGCTGAACAGC 46841 Query 54065 CGC------CAGATCAAGGTCACGTTCCGCGACCAGGACGGCAAAA--------CGCA-C 54109 ||| |||||| | ||| || || |||| ||| | | ||| | Sbjct 46842 CGCGTGCCGCAGATCTTCGACAC----CGTGA--AGGATGGCGACAGCGAGCGCCGCGTC 46895 Query 54110 GTCGACGCCGAGGCGACCGAGAAGGCCAACGACGTCGC-GCAGAAGATGCGCGCCGCGTT 54168 || | | || | |||||| ||| || |||| || ||||||||| | || || Sbjct 46896 CTCAATGTCGTCGACACCGAGGCGGCGAA-GACGAAGCTGCAGAAGATCAAGGACGAATT 46954 Query 54169 CAGCCGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACTACAACGA 54228 | |||||||| ||| | ||| | | ||| ||||||| || | | ||||||||| Sbjct 46955 CCAGCGCTGGATCTGGTCCGACCCCGATCGCACCGACCGCCTGGCGCGCGTCTACAACGA 47014 Query 54229 GAACTTCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGT 54288 |||||||||||||||||| ||| ||||| || ||||| |||| ||| || |||| Sbjct 47015 CCGCTTCAACAACATCGCCCCACGCGCCTTCGATGGATCGCATCTGAAGCTACCCGGCGC 47074 Query 54289 GTCGCTGCGC-TTCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGG 54347 || |||| || | || | | | ||||| || | |||||||||| ||| || Sbjct 47075 CTCTG-GCGCCTTTGTTCTTTATGGGCATCAGAAACGTGGCATCTGGCGCATCATCTCGG 47133 Query 54348 AAGGCGATATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCGA 54407 || | || |||||||||||||||||||| |||||||| | |||||| || Sbjct 47134 CGGGTTCGACCTATCTCGCGCACGCTGTCGGCGCCGGCAAGACCATGACGATGGCGGCCG 47193 Query 54408 CCGGCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTATGCGGTGCCGAACC 54467 | | |||||| |||||||||| |||||| | |||| ||||| | || || || Sbjct 47194 CGGTGATGGAGCAGCGCCGGCTCGGCCTGATCGCCAAGGCGATGATCGTCGTTCCCGGCC 47253 Query 54468 ACATGCTCGCGCAGTTCGCGCGCGAGTTCCTTGAGCTGTACCCGGCCGCGAACATCATGG 54527 || || |||||| |||||||| || || | ||| || ||| |||| ||| ||| Sbjct 47254 ACTGCCTGGCGCAGGCGGCGCGCGAATTTCTCGCGCTCTATCCGAACGCGCGGATCCTGG 47313 Query 54528 TCGCGGACGAGCAGAATTTCCATACGCACAACCGCCGCCGGTTC--GTCGCGCAGGCCGC 54585 ||||||||||| |||||| | | |||| || | || ||| ||||||| || || Sbjct 47314 TCGCGGACGAGACCAATTTCAGCAAGGACAAGCGGCATCGCTTCCTGTCGCGC--GCGGC 47371 Query 54586 GCTCAATAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGCCGCATC 54637 | | | ||| |||||||||||||| || || || ||| || |||| Sbjct 47372 GACCGCGACTTGGGATGCGATCATCATCACCCATTCAGCTTTCCGCTTCATC 47423 >seq24987 Length=52459 Score = 181 bits (200), Expect = 4e-41 Identities = 340/497 (68%), Gaps = 2/497 (0%) Strand=Plus/Plus Query 54148 GCAGAAGATGCGCGCCGCGTTCAGCCGCTGGATTTGGACGGACACGAAGCGCGCCGACCG 54207 ||||||||| | ||| ||| |||||||| ||| | || | | || | ||||| Sbjct 48374 GCAGAAGATCAAGGACGCCTTCCAGCGCTGGATCTGGTCCGATCCCGATCGGACGGACCG 48433 Query 54208 GCTCGTCAACTACTACAACGAGAACTTCAACAACATCGCCCCGCGCCAGTTCGACGGCTC 54267 ||| | ||||||||| ||||||||||||||| || || |||||||| || Sbjct 48434 GCTGGCGCGGGTCTACAACGACCGCTTCAACAACATCGCGCCTCGTGCCTTCGACGGGTC 48493 Query 54268 GCACCTGACGCTGCCGGGCGTGTCGCTGCGCTTCGAC-CTGCGCGAGAACCAGAAGCGCG 54326 || |||| ||| ||||||| || |||| | || || | | |||||||||||| Sbjct 48494 CCATCTGAAGCTCCCGGGCGCCTCTG-GCGCCTTTACTCTTTATGGGCACCAGAAGCGCG 48552 Query 54327 CCATCTGGCGCGGCATTCAGGAAGGCGATATGTACCTCGCGCACGCTGTCGGCGCGGGCA 54386 |||||||||| | | || ||| | || ||||| ||||| |||||||| |||| Sbjct 48553 GCATCTGGCGCATCGTCTCGGCGGGCTCGACCTATCTCGCCCACGCGGTCGGCGCTGGCA 48612 Query 54387 AGACGTTCACGATGATCGCGACCGGCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGC 54446 |||| | || ||| || || ||||||| ||||| |||| |||||| | |||| Sbjct 48613 AGACCATGACCATGGCGGCCGCCATCATGGAGCAGCGCAGGCTCGGCCTGATCGCCAAGG 48672 Query 54447 CGATGTATGCGGTGCCGAACCACATGCTCGCGCAGTTCGCGCGCGAGTTCCTTGAGCTGT 54506 ||||| | ||||| ||| || |||||| || ||||||||||| | ||| | Sbjct 48673 CGATGCTGGTCGTGCCCGGCCATTGCCTGGCGCAGGCTGCCCGCGAGTTCCTGGCGCTCT 48732 Query 54507 ACCCGGCCGCGAACATCATGGTCGCGGACGAGCAGAATTTCCATACGCACAACCGCCGCC 54566 | ||| |||| ||| | ||||| |||||| |||||| | | |||| || | | Sbjct 48733 ATCCGAACGCGCGCATTCTCGTCGCCGACGAGACCAATTTCACCAAGGACAAGCGGCAGC 48792 Query 54567 GGTTCGTCGCGCAGGCCGCGCTCAATAACCCGGACGCGATCATCATCACGCACTCGGCGT 54626 | || | ||| ||||||| | ||||||||||||||||||||| ||||||| Sbjct 48793 GCTTTCTGTCGCGGGCCGCGACGGCGACATGGGACGCGATCATCATCACGCATTCGGCGT 48852 Query 54627 TCGGCCGCATCGGCATG 54643 || | ||||||| || Sbjct 48853 TCCGTTTCATCGGCGTG 48869 Score = 125 bits (138), Expect = 3e-24 Identities = 343/515 (67%), Gaps = 19/515 (4%) Strand=Plus/Plus Query 55700 GGCGTGCCGCGCGAGCAGATCGCGTTCATGCGCGACAACAAGGAGCACGCCAAG--AAGG 55757 ||||| ||| | | | ||||| ||||||| ||| ||||| || || ||| ||| Sbjct 49920 GGCGTCCCGGCCTCGGAAATCGCCTTCATGCAGGACTACAAGAAGTCCG--AAGCCAAGC 49977 Query 55758 AGCGCCTGTTCGCGGACATGCGCGAGGGCAAAAAGCGCATCCTGATCGGCGGCAAGGAC- 55816 |||||||||||| ||| |||||| ||||| | ||| ||||| ||||| | ||| Sbjct 49978 AGCGCCTGTTCGGTGACGTGCGCGCCGGCAAGATCCGCTTCCTGGTCGGCTCCTCCGACA 50037 Query 55817 --ATGGAAACCGGCGTGAACGTGCAGAAGCGCCTCTACAGCG-AGGAGCATCTGGACGCG 55873 |||| ||||| || || | |||| |||||| | ||| | | || || |||| | Sbjct 50038 CGATGGGCACCGGTGTCAATGCGCAGCTGCGCCT-GAAGGCGTTGCATCACCTCGACGTG 50096 Query 55874 CCGTGGTTCCCGGCGTCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAACCAG 55933 || ||| | ||| || |||||||||| ||||| |||||| | || |||||||| ||| Sbjct 50097 CCATGGCTGCCGTCGCAGATCGAGCAGCGTGAGGGCCGCATCGTGCGACAGGGCAATCAG 50156 Query 55934 AACAAGCAGGTGCGCATCCGCGCGTGGGCGA-CGAAGGGCAGCTACGACAGCACGATGTG 55992 || | | || ||| ||| | |||| |||||| ||| || ||||||||| Sbjct 50157 CACGACGAAGTCGATATCTTCGCCTATGCGACCGAAGGCTCGCT-TGATGCCACGATGTG 50215 Query 55993 GGGGATGAACGCCCGCAAGGCGCGGTTCATCGAACAGGCCCTCAACGGCGACGACAGCG- 56051 | || || | ||||| || || ||||||| ||| || |||||| || || Sbjct 50216 GCAGAACAATGAGCGCAAAGCTCGTTTCATCGCCGCGGCGCTGTCGGGCGAC-ACCTCGA 50274 Query 56052 TGCGCTCGCTCGAGGACGTGTCTGAAGCGTCGGC------GTTCGACATGGCCGCCGCGC 56105 | || ||| || ||| || |||| ||| ||||| ||||||| ||| Sbjct 50275 TTCGTCGGCTGGAAGACCTGGGCGAAGGCCAGGCGAACCAGTTCGCCATGGCCAAGGCGA 50334 Query 56106 TGGCGTCGGGCGACGAGCGCTATCTGAAGATGGCCGGCCTGAAGGCCGACGTCGAGCGCC 56165 | || || |||||| |||| || ||| |||||| | ||||||| ||| || | Sbjct 50335 TCGCCTCAGGCGACCCGCGCCTGATGCAGAAGGCCGGATTAGAGGCCGATATCGCACGGC 50394 Query 56166 TGGAGCGTCTGAGCTACGCGCACCACGACGACCAG 56200 |||| ||| || | ||| || |||||| ||| Sbjct 50395 TGGAACGTTTGCGTGCCGCCCATGTCGACGATCAG 50429 >seq24986 Length=52538 Score = 161 bits (178), Expect = 4e-35 Identities = 359/533 (67%), Gaps = 17/533 (3%) Strand=Plus/Minus Query 54109 CGTCGACGCCGAGGCGACCGAGAAGGCCAACGACGTCGC-GCAGAAGATGCGCGCCGCGT 54167 ||||||| | ||||| || |||| |||| || ||| ||||| | ||| | Sbjct 16011 CGTCGACACTGAGGC---CGCGAAGACCAA-------GCTGCAAAAGATCAAGGACGCCT 15962 Query 54168 TCAGCCGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACTACAACG 54227 || |||||||| ||| | || || | ||| |||| || | | | ||| |||| Sbjct 15961 TCCAGCGCTGGATCTGGTCCGATCCGGATCGCACCGATCGTTTGGCGCGCGTCTATAACG 15902 Query 54228 AGAACTTCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCG 54287 | ||||||||||||||| || || ||||| ||||| || || | || ||||||| Sbjct 15901 ACTGCTTCAACAACATCGCGCCACGAGCCTTCGATGGCTCCCATCTAAGACTTCCGGGCG 15842 Query 54288 TGTCGCTGCGC-TTCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAG 54346 || |||| || | ||| | | ||||||| |||| |||||||||| | | | Sbjct 15841 CCTCTG-GCGCCTTTGTCCTTTATGGGCACCAGAAACGCGGCATCTGGCGCATCGTCTCG 15783 Query 54347 GAAGGCGATATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCG 54406 | || | || ||||| ||||| |||||||| |||||||| | |||||| || Sbjct 15782 GCCGGATCGACCTATCTCGCCCACGCCGTCGGCGCCGGCAAGACCATGACGATGGCGGCC 15723 Query 54407 ACCGGCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTATGCGGTGCCGAAC 54466 ||| |||||| |||||||||| || ||| | |||| ||||| | ||||| | Sbjct 15722 GCCGTCATGGAACAGCGCCGGCTCGGGCTGATCGCCAAGGCGATGCTCGTTGTGCCCGGC 15663 Query 54467 CACATGCTCGCGCAGTTCGCGCGCGAGTTCCTTGAGCTGTACCCGGCCGCGAACATCATG 54526 || || |||||| |||||||| || || | ||| || ||| |||| || || Sbjct 15662 CATTGCCTTGCGCAGGCGGCGCGCGAATTTCTCGCGCTCTATCCGAACGCGCGGATACTG 15603 Query 54527 GTCGCGGACGAGCAGAATTTCCATACGCACAACCGCCGCCGGTTC--GTCGCGCAGGCCG 54584 |||||||||||| |||||| | | |||| || | ||| ||| ||||||| || | Sbjct 15602 GTCGCGGACGAGACCAATTTCACGAAGGACAAGCGACACCGCTTCCTGTCGCGC--GCGG 15545 Query 54585 CGCTCAATAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGCCGCATC 54637 || | | |||||||||||| ||||| || ||||| ||| || |||| Sbjct 15544 CGACCGCGACGTGGGACGCGATCATTATCACCCATTCGGCCTTCCGCTTCATC 15492 Score = 132 bits (146), Expect = 2e-26 Identities = 342/513 (67%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 55700 GGCGTGCCGCGCGAGC-AGATCGCGTTCATGCGCGACAACAAGGAGCACGCCAAGAAGGA 55758 |||||||| |||| | ||||||| ||||||| ||| ||||| | || |||| | Sbjct 14435 GGCGTGCC-CGCGTCCGAGATCGCCTTCATGCAGGACTACAAGAAATCCGAGGCGAAGCA 14377 Query 55759 GCGCCTGTTCGCGGACATGCGCGAGGGCAAAAAGCGCATCCTGATCGGCGGCAAGGACA- 55817 |||||| |||| ||| |||| | || || ||| ||||||||||| |||| Sbjct 14376 GCGCCTCTTCGGCGACGTGCGTGCCGGAAAGGTCCGCTTCCTGATCGGCTCGTCCGACAC 14317 Query 55818 --TGGAAACCGGCGTGAACGTGCAGAAGCGCCTCTACAGCGAGGAGCATCTGGACGCGCC 55875 ||| ||||| ||||| | |||| ||| ||| | | | | || || |||| || Sbjct 14316 GATGGGGACCGGTGTGAATGCGCAGTTGCGACTCAAGGCCCTGCATCACCTCGACGTCCC 14257 Query 55876 GTGGTTCCCGGCGTCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAACCAGAA 55935 ||| | ||| || |||||||||||||||| |||||| | || |||||||||||| | Sbjct 14256 CTGGCTGCCGTCGCAAATCGAGCAGCGCGAGGGCCGCATCGTGCGGCAGGGCAACCAGCA 14197 Query 55936 CAAGCAGGTGCGCATCCGCGCGTGGGCGACGAAGGGCAGCTACGAC-AGCACGATGTGGG 55994 | | |||| ||| ||| | || || | |||||| |||| ||| ||||||| Sbjct 14196 CGATGAGGTCGATATCTTCGCCTATGCCACTGAAGGCAGCCTCGACGCGCA-GATGTGGC 14138 Query 55995 GGATGAACGCCCGCAAGGCGCGGTTCATCGAACAGGCCCTCAACGGCGACGACAGCG-TG 56053 || || | |||||||| || ||||||| || || |||||| || || | Sbjct 14137 AGAACAATGAGCGCAAGGCCCGCTTCATCGCGGCCGCGCTGTCGGGCGAC-ACCTCGATC 14079 Query 56054 CGCTCGCTCGAGGACGTGTCTGAAGCGTCGGC------GTTCGACATGGCCGCCGCGCTG 56107 || | | ||||| || || | ||| ||||| ||||||| ||| | Sbjct 14078 CGACGGTTGGAGGATATGGGCGAGGGCCAGGCCAACCAGTTCGCCATGGCCAAGGCGATT 14019 Query 56108 GCGTCGGGCGACGAGCGCTATCTGAAGATGGCCGGCCTGAAGGCCGACGTCGAGCGCCTG 56167 ||||||||||||||||| || | | || || ||| | |||||| ||| ||| || Sbjct 14018 GCGTCGGGCGACGAGCGGCTCATGCAAAAAGCAGGACTGGAAGCCGACATCGCGCGGCTC 13959 Query 56168 GAGCGTCTGAGCTACGCGCACCACGACGACCAG 56200 || ||||| || ||| || |||||| ||| Sbjct 13958 GAACGTCTCCGCGCCGCTCATATCGACGATCAG 13926 Score = 86.0 bits (94), Expect = 3e-12 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 52577 CTGCACGACTACTTCTTCGCCAAGACCATCGACCGCGTGAAGCCGGGCGGCATGCTCGTG 52636 ||||| || |||||| | || | ||||||||| | ||||||| |||| ||||| | Sbjct 17597 CTGCATGATTACTTCATTGCACGGGCCATCGACCTCTTGAAGCCCGGCGC---GCTCGCG 17541 Query 52637 ---TTCGTCACCAGCAAGGGCACGATGGACAAGGCGAGCGACCGCGCGCGCCGCTACCTC 52693 ||||| |||||| ||||||||||||||||||| || | || ||| || || Sbjct 17540 GCCTTCGTGACCAGCGCGGGCACGATGGACAAGGCGGACGCCTCGGCTCGCGAGCACATC 17481 Query 52694 GCCGACCGCGCGAACCTGATCGGCGCCATGCGGCTG-CCGCAGACCGCGTTCAAGGACAA 52752 || | || | ||||||| ||||| || ||| ||| || | || ||| | | Sbjct 17480 GCGAAGTCAGCCGATCTGATCGCGGCCATCCGCCTGCCCGAAGGCAGC-TTCCGCGCCCG 17422 Query 52753 CGCCGGCACGGAAGTCGTGACCGACGTGCTATTCCTCCAGAAGCGC 52798 |||||||||||| ||||| ||| | || || ||| ||||||| Sbjct 17421 CGCCGGCACGGATGTCGTCGTCGATATTCTCTTTTTCCGGAAGCGC 17376 >seq47259 Length=37638 Score = 120 bits (132), Expect = 1e-22 Identities = 290/435 (67%), Gaps = 12/435 (3%) Strand=Plus/Minus Query 54220 CTACAACGAGAACTTCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCT 54279 ||||||||| || ||||||| | || | |||||| ||||||||| ||||| | || Sbjct 35300 CTACAACGAAAAGTTCAACACCCGCGTCAACCGCCAGCACGACGGCTCCCACCTCGCCCT 35241 Query 54280 GCCGGGCGTG-TCGC---TGCGCT--TCGACCTGCGCGAGAACCAGAAGCGCGCCATCTG 54333 || ||| | || | || | | || | || ||| |||||||| ||| | || Sbjct 35240 CCCCGGCAAGGTCCCGGATGAGGTGATCAAGCTCCGCCGCCACCAGAAGAACGCTGTGTG 35181 Query 54334 GCGCGGCATTCAGGAAGGCGATATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTT 54393 ||||||||| | || || ||| |||| |||| |||||||| |||||||| || Sbjct 35180 GCGCGGCATCTACGAGCGCTTCATGCTGCTCGACCACGTCGTCGGCGCCGGCAAGACCTT 35121 Query 54394 CACGATGATCGCGACCGGCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTA 54453 ||| ||||||| || |||||| ||| ||| ||||||||||| |||||| ||| Sbjct 35120 CACCGCGATCGCGCGCGTGATGGAGCGGCGGCGGATGGGCCTGTCCCGCAAGCCCATGAT 35061 Query 54454 TGCGGTGCCGAACCACATGCTCGCGCAGTTCGCGCGCGAGTTCCTTGAGCTGTACCCGGC 54513 | |||||||||||| || ||| |||| || || || |||||||||| Sbjct 35060 CGTGGTGCCGAACCATCTGGTCGACCAGTGGACGGCGGACGTCTACCGCCTGTACCCGGG 35001 Query 54514 CGCGAACATCATGGTCGCGGACG---AGCAGAATTTCCATACGCACAACCGCCGCCGGTT 54570 ||| || || |||||| || || | | ||| | | | | |||||||||| | Sbjct 35000 CGC---CAAGGTGCTCGCGGCCGGCAAGAACCAGTTCGAGAAGAAGGGCCGCCGCCGGCT 34944 Query 54571 CGTCGCGCAGGCCGCGCTCAATAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGG 54630 |||| || |||| | ||||| ||||| || |||| || ||||||| Sbjct 34943 GTTCGCCAAGATCGCGACGGGAGATTGGGACGTCGTCATCGTCCCGCATTCCTCGTTCGG 34884 Query 54631 CCGCATCGGCATGTC 54645 | ||||||||| || Sbjct 34883 CTTCATCGGCATCTC 34869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201182377431606