Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq54491 147 3e-30 seq27440 138 2e-27 seq53723 98.7 2e-15 seq32030 98.7 2e-15 seq34751 91.5 2e-13 >seq54491 Length=272697 Score = 147 bits (162), Expect = 3e-30 Identities = 191/263 (73%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 122406 GGCACGAAAAAG-CAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATG 122464 ||| || ||||| | ||||| || ||||| || ||| |||| | ||||| || ||| Sbjct 166577 GGCGCGGAAAAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATG 166518 Query 122465 CGCTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCC 122524 ||||| | ||| | || || ||| || |||||||||| ||| | | || ||| Sbjct 166517 CGCTTCAATCTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGCTGAAATCC 166458 Query 122525 ATCATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGAC 122584 ||| | ||||| || || ||||| ||| |||||| ||||||||| | || ||||||||| Sbjct 166457 ATCGTACATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGAC 166398 Query 122585 AACAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTAC 122644 || |||| ||||||||||||||||| || | |||| |||||||||| || ||| Sbjct 166397 CACGGCGTCTCGATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTAC 166338 Query 122645 GGTAAGCAATGGCGTGAGTGGCC 122667 || ||| ||||| |||||| Sbjct 166337 GGATCGCAGTGGCGCTCGTGGCC 166315 >seq27440 Length=426762 Score = 138 bits (152), Expect = 2e-27 Identities = 220/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Plus Query 122348 AGGATAATTTGCACCATGAAACAATATCTGGACTTACTGCGTGACG-TTCGTGACAACGG 122406 ||| | ||| || ||||| | ||||||| |||| | || || | | ||| | | |||| Sbjct 328812 AGGCTTATTCGC-CCATGCACCAATATCAGGACCTGCT-CGAGCGGATTCTTTCCGACGG 328869 Query 122407 GCACGAAAAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCG 122466 ||| || | || || || ||||| ||||| || ||| |||||||| |||||||| Sbjct 328870 CGTCGAGAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCG 328929 Query 122467 CTTTGACCTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCAT 122526 ||| | ||| | || |||||| || | |||||||| | | | | | || Sbjct 328930 CTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGTTGAAGGCGAT 328989 Query 122527 CATCCATGAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAA 122586 | | |||||||| || |||||||| | |||||| ||||||||| | || ||| ||||| Sbjct 328990 CGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAA 329049 Query 122587 CAACGTCAGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGG 122646 | ||||| |||||||| || ||||| |||| |||| ||||||||||||| || || Sbjct 329050 CGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGG 329109 Query 122647 TAAGCAATGGCG 122658 | || ||||| Sbjct 329110 CCATCAGTGGCG 329121 >seq53723 Length=82647 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| | || ||||||||| || |||||||||||||||||||| Sbjct 47101 TGTAGCTCAGTTGGT-TAGAGCGTCGGCCTGTCACGCCGAAGGTCGCGGGTTCGAGCCCC 47159 Query 169792 GTCAGTCCTGCCATTT 169807 |||| ||| ||||||| Sbjct 47160 GTCACTCCCGCCATTT 47175 >seq32030 Length=166927 Score = 98.7 bits (108), Expect = 2e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct 32867 GTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 32809 Query 169793 TCAGTCCTGCCATTTT 169808 || || |||||||| Sbjct 32808 TCTCTCGCGCCATTTT 32793 >seq34751 Length=230815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/62 (94%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct 209063 GTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 209005 Query 169793 TC 169794 || Sbjct 209004 TC 209003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777080445063200