Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq46263 145 5e-29 seq55950 98.7 6e-15 seq55612 96.9 2e-14 seq29627 89.7 3e-12 seq52665 87.8 1e-11 >seq46263 Length=68285 Score = 145 bits (160), Expect = 5e-29 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| ||||||||||| || || |||||||| ||||||||||| ||||| || |||||| Sbjct 44206 GCAGTTATTACTGTTCCTGCTTACTTTAATGACTCTCAACGTCAGGCAACAAAGGATGCG 44265 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||||||||| | || |||||||||||||| || ||||||||||| || || Sbjct 44266 GGGCAGATTGCAGGTCTAGAAGTATTACGTATTATTAACGAGCCAACAGCAGCTGCTCTG 44325 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| ||||| || || Sbjct 44326 GCTTATGGGCTTGAGAAAAA 44345 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 |||| ||||| | | | |||||||||||| || || ||||| | |||||| || |||| Sbjct 44338 CAAGCCCATAAGCCAGAGCAGCTGCTGTTGGCTCGTTAATAATACGTAATACTTCTAGAC 44279 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 ||||||| | ||| ||| |||||||| ||||| | |||||||| |||||||| | Sbjct 44278 CTGCAATCTGCCCCGCATCCTTTGTTGCCTGACGTTGAGAGTCATTAAAGTAAGCAGGAA 44219 Query 290943 CTGTAATAACAGCTT 290957 | |||||||| |||| Sbjct 44218 CAGTAATAACTGCTT 44204 Score = 100 bits (110), Expect = 2e-15 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 475999 TGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGA 476058 ||| ||||||||| | || || |||| | | || |||| ||| || || | | || Sbjct 45069 TGACAATCAAACAGCCGTGACAATCCGAGTGTTCCAAGGGGAACGAGAAATGGCGGCCGA 45128 Query 476059 TAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCC 476118 |||||| | | || ||| |||| | ||||||||| |||| || |||| || || Sbjct 45129 TAATAAGTTATTGGGTCAATTTGATCTGGTCGGTATTCCTTCTGCACCGCGAGGCGTGCC 45188 Query 476119 TCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 ||||||||| ||||| ||||| |||||||| || |||||| ||||||| Sbjct 45189 TCAAATTGAGGTTACCTTTGACATTGATGCCAACGGTATTGTTAATGT 45236 >seq55950 Length=6881 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || || || || || || | || || || || || || Sbjct 928 ACGAAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 987 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||| ||||| || || ||||| || |||||||| || || || Sbjct 988 ACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCC 1047 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || |||||||| || || ||||| || || || || || Sbjct 1048 CTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCAATGGTGTCGCTGGACTCGACCTCGAG 1107 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| || || |||||||| ||||| ||||| ||||| Sbjct 1108 GGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTG 1146 >seq55612 Length=3786 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 878087 AATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAGCATCT 878146 || || || ||||| || ||||| | || || | | | ||||||||||| || || | Sbjct 1645 AACGAGCTCATTCCTGAGATTCCGATGGAGCTCACAGTGAAGATGGCATACCAGGCGGCC 1586 Query 878147 AAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAAT 878206 || || ||||| ||| | ||||| || ||||| || || | || |||||||| || || Sbjct 1585 AAGGGCATGCACTTCCTGCACTCGTCGGGCATCGTGCACCGCGACCTCAAGTCGCTCAAC 1526 Query 878207 CTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGACAAAGTT 878262 || || || || | || ||||| || || ||||| || ||||| |||| ||||| Sbjct 1525 CTGCTGCTCGACGCCAAGTGGAACGTCAAGGTGAGCGACTTTGGCCTGACCAAGTT 1470 >seq29627 Length=36956 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 |||||||| || || || | || || ||||| ||| | ||||| |||||||| |||||| Sbjct 18495 AAGATGGCCTACCAGGCGGCCAAGGGCATGCACTTCCTCCACTCGTCCGGCATCGTCCAT 18554 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGT 878242 | ||||||||||| || ||||| || || || || || ||||| || || ||| || Sbjct 18555 CGCGATCTCAAGTCGCTCAATCTGCTCCTCGACTCCAAGTGGAACGTCAAGGTGCGT 18611 >seq52665 Length=8192 Score = 87.8 bits (96), Expect = 1e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 879926 GTTGATGAAAATTATAATGCTCGTGTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAA 879985 || |||||||| | |||| || ||||| ||||| || || |||| || | ||| Sbjct 4462 GTGGATGAAAACTGGAATGTCAAAGTAGCTGACTTTGGGTTCGCGCGGATCAAGGAGGAG 4403 Query 879986 AATACTACTATGACAAGATGTGGTACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGT 880045 ||| | || ||||| |||| || ||||| |||||||| || || || |||| || || Sbjct 4402 AATGCCACGATGACCCGATGCGGCACTCCCTGTTGGACAGCGCCGGAGGTCATCCGCGGA 4343 Query 880046 GAAAAATATGACGAAAAGACCGATGTATTTTCATTTGGTATTGTTATGTGGGAAGTATTA 880105 || || || ||||| | || || | |||||| || || ||||||| | || | Sbjct 4342 GAGAAGTACGACGAGCGAGCTGACGTCTATTCATTCGGCATCACTATGTGGCAGGTGCTC 4283 Query 880106 ACTGGTAAAGAACCTTTTGCAGG 880128 || | || ||||||||||| || Sbjct 4282 ACGCGCAAGGAACCTTTTGCTGG 4260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265745260307816