Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq36931 183 8e-42 >seq36931 Length=650932 Score = 183 bits (202), Expect = 8e-42 Identities = 286/402 (71%), Gaps = 9/402 (2%) Strand=Plus/Minus Query 24529 CGGCGTTCGTCGAGATATTCCCTCATCCGCTCCGGTCGCTTGGTCAGAACCTGGAAGGTG 24588 |||| || || |||||| || ||||| | | ||||| ||||| ||||| || || Sbjct 421549 CGGCATTGGT-GAGATAGCGCCGCATCCTTGCTGCACGCTTCGTCAGCACCTGAAACGTA 421491 Query 24589 TGCTGGCGGCACTCTC-CCATCACCGCAAACACCTGGTCGATCCATTCATCTGGCACCGC 24647 ||||| ||| | | |||||||||| || || |||||||||| | |||||||| Sbjct 421490 TGCTG-CGGTGCCAGCGCCATCACCGCGAAGACGCGGTCGATCCAGGCGTCTGGCACGTT 421432 Query 24648 CTCATGGAACAGGTCTGCATGTGCGCAGACGAAGATCCGGCGCGGCGCGCGCCAGCGAAT 24707 ||||||||| || || |||| ||||||||||| | | ||||||| |||| | Sbjct 421431 CTCATGGAAGAGATCGCCATGGGCGCAGACGAACACCATGCGCGGCTTCTTCCAGGACAG 421372 Query 24708 GGGCTGGTCGAGCCAGCCCTCGTTGAACCGCACCTCGCCTGTCCAGACAG-ACCGCCC-- 24764 |||||| | ||| |||||||| ||||||||||| |||||||| | |||| || Sbjct 421371 CGGCTGGGTCAACCACTGATCGTTGAAGCGCACCTCGCCGGTCCAGACCGGACCGGCCTT 421312 Query 24765 GCCAGTTTCGCGGGTCAGCCCGGCGCGGCTGGGGTGATGGCGCAGGCGCGATCCGGCCAG 24824 || | || |||||| |||||||| ||| || | ||||| |||| ||||| || Sbjct 421311 GCTA---TCCTTGGTCAGACCGGCGCGCGAGGGATGGTTCCGCAGCCGCGTGCCGGCGAG 421255 Query 24825 CCCCATGGCGTAACAGTTGGTGCAGCCCGCGCTGACCATGCTGCAGCCGGTGATGATGTT 24884 | ||| ||||| |||||||||||||||| || || |||||| |||||| || Sbjct 421254 CTTCATCGCGTAGCAGTTGGTGCAGCCCGGCGAGAGCACCGAGCAGCCCGTGATGGGATT 421195 Query 24885 CCAGGTGGCGTCGGTCCAGCCGATCAGGGTTTTGTCAGCCAT 24926 ||| || || || ||||| ||||| || ||||| ||||| Sbjct 421194 CCATGTCGCATCCGTCCATTCGATCTTGGACTTGTCCGCCAT 421153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129355979715604