Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq53683 93.3 1e-14 >seq53683 Length=4521 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 2407 TGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAGATGTACTCGTGCGCCTTTGTG 2466 |||||||||| || ||| || || || | ||||||| |||||||| || ||| Sbjct 3214 TGGTCGTAGTGGTAGGTGGCGGATTTAGAAAAGAGGAAGACATACTCGTGGGCGCGCGTG 3273 Query 2467 CAGCGGTCGCGCACGCTCTCCGGCATTGG--GTTTGGCTTGTGCCAGATAATATCCTGAC 2524 ||||| ||| || ||| ||| ||| ||||||| |||||| || || | Sbjct 3274 GGCCGGTCTTTGACGGATTCTGGC--TGGCAGTTGGGCTTGTTCCAGATGATGTCGGATC 3331 Query 2525 GCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGCCAGGGGATGCCGATAAGGT 2584 ||| |||||| || ||||||||||||||||| || || | ||| || | ||||| |||| Sbjct 3332 GCAAGTACCATCCATCGGCTTGCAGGGCGAAGGCCACCCTCCACGGCAGACCGATGAGGT 3391 Query 2585 CTTTTGCTTTCAATCCGTTAGG 2606 |||| | ||||| || || || Sbjct 3392 CTTTGGGCTTCAACCCCTTCGG 3413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130014735539228