Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq53501 165 1e-35 seq29743 134 2e-26 >seq53501 Length=235563 Score = 165 bits (182), Expect = 1e-35 Identities = 375/560 (67%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 47770 CGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGC 47829 || || || | ||| | ||||| || || || |||| || ||| | ||||| || ||| Sbjct 1704 CGAACTGAGTGTTGTTCGCCTGTTGCTATGACGTAATCCTCCGGTACGTCTTGCTGCAGC 1763 Query 47830 ATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGA 47889 || | |||| ||| |||||||| | |||||| ||||| || ||||| |||| || Sbjct 1764 ATCATCCACTGCATCTCTACATAATCGCGGGCATGCCCCCAATCGCGAAGCGCATTCAGG 1823 Query 47890 TTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAA----TGCTCTTGT 47945 || |||||||| ||| ||| || | || || ||| | | ||| | || Sbjct 1824 TTCCCTAGATA--AACCTTCTC-CTGAAGACCA-AGTTTGATACGAGCCAGTGCGCGCGT 1879 Query 47946 AATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACC 48005 ||||| | || || || || || || || |||| ||||||||||| || || || || Sbjct 1880 GATCTTTCTGGTGACGAATGTCTCGCCGCGAATTGGTGATTCATGATTGAACAGGATGCC 1939 Query 48006 ACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAG 48065 | |||||| ||| ||||||| || ||||||||| |||||||| | || || Sbjct 1940 GTTGCAGGCAAACAGCCCGTATGCCTCGCGATAGTTCACCGTAATCCAGTATGCGTATAG 1999 Query 48066 TTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTC 48125 || ||||| |||| || || || |||||||| || || ||||| |||| || || || Sbjct 2000 CTTCGCAACCGCATACGGCGACCGAGGATAGAAGGGCGTCGTCTCCTTCTGAGGTGTTTC 2059 Query 48126 TTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCAT 48185 || || ||||| ||||| ||| || |||||||||| || | | || | Sbjct 2060 CTGAACAAGCCCATACAGTTCCGAGGTCGAGGCTTGATAGAATCGGGTTTTTTTCTCAAG 2119 Query 48186 CTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGT 48245 | || | |||| || ||||| | | || | ||| | || || | | | || Sbjct 2120 TCCGAGAATGCGGATCGCTTCAAGAATACGCAACGGGCCGAGCGCGTCGGAATTTGCCGT 2179 Query 48246 ATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 |||||| ||| ||| || || || ||||| ||||| ||| | ||||| || ||||| Sbjct 2180 ATACTCCGGCTCCTCGAAGGACACAGCAACATGGCTCTGCGCCGCGAGATTGTAGATCTC 2239 Query 48306 ATCTGGTTGAACCTGCTGAA 48325 || || ||||| | ||||| Sbjct 2240 GTCAGGCTGAACTTCCTGAA 2259 >seq29743 Length=27281 Score = 134 bits (148), Expect = 2e-26 Identities = 368/559 (66%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 47770 CGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGC 47829 || ||||||| ||| || || ||||| || ||||| || |||| || || || ||| Sbjct 2408 CGAACAGAATGTTGCACGCCCGTAGCAATCACGAAATCTTCCGGTTTGTCCTGCTGCAGC 2349 Query 47830 ATTAACCACATAGCCT--CGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAA 47887 || | ||| | || | ||||||| || | || || ||||| || || | || || | Sbjct 2348 ATCAGCCA--TTGCATTTCGACATAGTCACGCGCGTGCCCCCAATCGCGCAAGGCGTCCA 2291 Query 47888 GATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAA 47947 |||| || || || | | || ||| || | ||| || || | || | Sbjct 2290 GATTGCCAAGGTAAAGCCGTTCCTGCAGGCCCAAATGGATACGCGCCAAAGCACGCGTGA 2231 Query 47948 TCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCAC 48007 |||| || || || || ||||| || || || ||||| |||||||| ||||| || Sbjct 2230 TCTTTCGCGTCACGAAGGTTTCGCCCCGCACCGGGGATTCGTGATTAAAGAGAATGCCGT 2171 Query 48008 TACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTT 48067 | ||||||||||| |||| | ||| || |||||| |||||||| |||| || | Sbjct 2170 TGCAGGCATACATGTCGTAAGCTTCGCGGTAGTTCACCGTGATCCAGTAGGCATAAAGCT 2111 Query 48068 TTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTT 48127 | || ||| | || || || || ||||| |||||||| ||||| | || || |||| | Sbjct 2110 TGGCGACAGCGTACGGTGAGCGCGGATAAAAAGGTGTCGTCTCCTTTTGGGGGATCTCCT 2051 Query 48128 GCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCT 48187 | ||| |||||| || ||| || || || ||||| ||| | | ||||| ||| Sbjct 2050 GGACCAAACCATACAGCTCAGATGTCGACGCCTGATA-----GAAGCGTGCCTTCC-TCT 1997 Query 48188 C-AAGC-----AAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGAC 48241 | |||| | || | ||||| || | | || || || | || || | | Sbjct 1996 CTAAGCCTGTGATCCGCATGGCCTCTAGGATACGCAAAGTCCCGAGAGCGTCGGAATTCG 1937 Query 48242 CAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAA 48301 | || || || ||| ||| |||||||| || || ||||| || | || || || | Sbjct 1936 CCGTGTATTCTGGCTCCTCGAACGAAACGGCGACGTGGCTCTGCGCTGCGAGGTTGTAGA 1877 Query 48302 TCTCATCTGGTTGAACCTG 48320 ||||||| || || ||||| Sbjct 1876 TCTCATCGGGCTGCACCTG 1858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665022381459440