Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq54738 150 7e-32 >seq54738 Length=223531 Score = 150 bits (166), Expect = 7e-32 Identities = 416/630 (66%), Gaps = 31/630 (5%) Strand=Plus/Minus Query 44405 ATCGCATCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGG 44464 || || |||||||| ||||||| || | |||||||| ||| || || ||| || Sbjct 200625 ATTGCCTCGGCATAAACACGGATTTCATATTGGGCATGAGAATCTGCGCGTAGGGAGAGA 200566 Query 44465 AAGTGGAAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGC 44524 || || | | |||||||||||||| ||||||||||||||| || |||| |||||| || Sbjct 200565 AAATGCATAAAGTTGTGTAGGTCAACCTTCCAATACCATTGTGTATAGAAATTGACAGGT 200506 Query 44525 AAGTTCATGCGGGCCAGTTCGCGGGCCAAGCCGTCCTGACCGTCATCGCTG--ATCATCT 44582 | ||||| ||||||| ||| ||||| || || || | | ||||| | |||| || Sbjct 200505 AGATTCATCCGGGCCAATTCACGGGCTAATCCCTCTTCATTCTCATCAATTTTATCACCT 200446 Query 44583 CTT--------------CAT-AGT-GATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAG 44626 || ||| ||| ||| || | | | | | ||| | |||| | Sbjct 200445 GTTTCAGATTCATTAAGCATCAGTTGATAATGGTCATAC-GCGCGGCCAGCATCCTCT-- 200389 Query 44627 TGTAGGACCCGCTGAGCCTCAGC--CCCCTGAAGAACATTA----TCATCGCGGCCCTGC 44680 | || | | || | | | | | || || | | | ||| |||| || || Sbjct 200388 TTTAAAAGCTGCATAATTTTTTCGGCTCGTGCAGCATCTAAAACGTCACCGCGACCTTGA 200329 Query 44681 CCGTTCACCTTCGACTGGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGC 44740 || || || ||||| | || | || | || | || ||||||||||| Sbjct 200328 TTATTAACTTTAGACTGAGCCGCCATATGCTCTGGGCGGGGAATGTAGAACTCTTTATCT 200269 Query 44741 ATGATCGAATAGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGG 44800 | ||| |||||||| ||||| ||||| ||||| || || ||||| ||||| |||||||| Sbjct 200268 AAGATTGAATAGCGTGCTGAATATTCGTTCACATTCGCTGTCCGATGACGAATCCATTGA 200209 Query 44801 CGGGCCACAAACACGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTG 44860 || || ||||| | ||||| || ||||||| || || ||||| ||||| ||| | Sbjct 200208 CGCGCGACAAAAATCGGCAGCTTCACATGAAACTTAATTTCACACATTTCAAAAGGGGTC 200149 Query 44861 GTGTGCCAATGGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCTTGGTG 44920 | || | ||||||||| | || ||| || | |||||| |||| ||| || Sbjct 200148 GAATGGCGATGGCGCATCAAATAATTGATCAGCCCTTGGTCCTCACTGATTTTCTTTGTT 200089 Query 44921 CCCTGACCGTAGGATACGCGGGCCATCTGGACGATAGCGCCGTC-CGTG-CCCATGTAGT 44978 || | ||| ||||| |||||||| || ||||| |||||| | | ||||| || | Sbjct 200088 CCTTTACCATAGGAGACGCGGGCTGCTTGAACGAT--CGCCGTATCATCTCCCATATAAT 200031 Query 44979 CGATTGGTCGGACAAAGCCATGATCTAGGA 45008 |||| || | |||||||||||||| || Sbjct 200030 CGATGACGCGAATAAAGCCATGATCTAAGA 200001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182021269323680