Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq49433 125 2e-24 seq34749 125 2e-24 seq30884 125 2e-24 seq30883 125 2e-24 seq30882 125 2e-24 seq30664 125 2e-24 >seq49433 Length=14558 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Minus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 14510 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 14454 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 14453 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 14394 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 14393 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 14334 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 14333 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 14274 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 14273 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 14214 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 14213 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 14169 >seq34749 Length=109604 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Plus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 108405 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 108461 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 108462 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 108521 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 108522 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 108581 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 108582 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 108641 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 108642 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 108701 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 108702 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 108746 >seq30884 Length=4389 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Minus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 1200 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 1144 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 1143 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 1084 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 1083 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 1024 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 1023 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 964 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 963 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 904 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 903 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 859 >seq30883 Length=20980 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Plus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 49 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 105 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 106 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 165 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 166 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 225 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 226 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 285 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 286 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 345 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 346 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 390 >seq30882 Length=13493 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Plus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 49 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 105 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 106 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 165 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 166 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 225 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 226 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 285 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 286 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 345 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 346 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 390 >seq30664 Length=8680 Score = 125 bits (138), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 31/346 (9%) Strand=Plus/Plus Query 39910 CTGGAGTTTTCCGCTAA-GTTTCCCTGGCTGGGAGAGGAGCGGAATCGCATGAAGGCATC 39968 ||||| |||||| | | | | ||||| ||| |||||| | || |||||||||||| Sbjct 7481 CTGGAATTTTCCAATTATGATCCCCTGTTGGGGCGAGGAGAGT--TC-CATGAAGGCATC 7537 Query 39969 GAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGT 40028 ||||||||| ||||| |||| ||||| | ||||||||| ||||| || |||||||| Sbjct 7538 GAAGTTCACCGAGGCACAGATCGCGTTTGTTTTGAAGCAGGCGGAGGACGGGACGCCGGT 7597 Query 40029 CGCAAAGATCTGCCGCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAA 40085 || || ||||||| ||||| || ||||| | ||| | | || ||||||| ||||| Sbjct 7598 TGCCGAGGTCTGCCGGAAGGCGGGCATCAGTGACGCGACGTTCTACAACTGGCGCAAGAA 7657 Query 40086 G--------------------CGATATG--GCGGCTAAAGCAGCTTGAGGACGAGAATGC 40123 | || ||| |||||| ||||| ||||| ||||| || Sbjct 7658 GTACGCCGGCCTGATGCCATCGGAGATGAAGCGGCTGCGCCAGCTCGAGGAAGAGAACGC 7717 Query 40124 CCGACTGAAGAAGATCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCAT 40183 | |||||| |||||| ||||||||| | | ||| | ||| || | ||||| | Sbjct 7718 CAAGCTGAAGCGGATCGTCGCCGACCTGTCTTTGGACAAAGCCATGCTGCAAGACGTGCT 7777 Query 40184 CCGCCGAA-AACTCTGAGGCCTTTCCGGAAGCGACAGCTCGTCGAC 40228 ||| || | ||||||||||| ||| || || | || |||||| Sbjct 7778 -CGCAAAAGAGCTCTGAGGCCTGGCCGCAAACGCGAACTTGTCGAC 7822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128530936014172