Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq32030 143 9e-30 seq34751 122 3e-23 >seq32030 Length=166927 Score = 143 bits (158), Expect = 9e-30 Identities = 290/427 (68%), Gaps = 10/427 (2%) Strand=Plus/Minus Query 40337 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTT 40393 ||| || ||||| ||| |||||| ||||| | | || |||||| | |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCGGCCGACGTCGCG 86138 Query 40394 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCC 40453 || | | |||||||| | | ||| | || |||||||||||||| |||| || Sbjct 86137 CAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGCC 86078 Query 40454 GTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATG 40511 ||| | | ||||| |||||||||||| || || || | || ||| |||||| Sbjct 86077 GTAGCGCTGCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGATG 86020 Query 40512 TCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGC 40571 |||| || ||||| || ||||| ||||| || ||||| |||||||| | || ||| | Sbjct 86019 TCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAC 85960 Query 40572 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40631 | | ||| |||||||||||||| || | | ||||||||||| ||||| | ||| Sbjct 85959 TTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGAG 85900 Query 40632 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40691 || || || || ||||| | ||| | ||| ||||| ||||||||| | ||| Sbjct 85899 CCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACACG 85840 Query 40692 ACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGC 40751 | |||||||| || | | ||| || |||| | ||| | |||| | |||| || Sbjct 85839 ATCAGGAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCCAGCTCGAAGGCGAGCCGC 85780 Query 40752 TTGCCGT 40758 ||| ||| Sbjct 85779 TTGGCGT 85773 Score = 95.1 bits (104), Expect = 4e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||||||||| || ||||| || |||||||| | ||||| | || || | ||| | Sbjct 86927 TCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGTCGCCGAGCGAATAGCCCGACATCA 86868 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39678 ||||||| | || | |||||| |||||||||||||||| ||||||| | ||||| Sbjct 86867 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCGAAGGTCTCTTTCAGGA 86808 Query 39679 TC 39680 || Sbjct 86807 TC 86806 >seq34751 Length=230815 Score = 122 bits (134), Expect = 3e-23 Identities = 193/275 (70%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 40467 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40524 ||||| ||||||||||||| || || || | || |||||||||||||| || |||| Sbjct 178905 ACGTAGCGGATCACCTCGCCGCGCCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 178962 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 | || ||||| || || || ||||| |||||||| | || ||| | | ||| |||| Sbjct 178963 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGA 179022 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 ||||||| || | |||| || |||||||| || || | || || || || || | Sbjct 179023 GGTCGGTAATGGTCAATGCGTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCC 179082 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 ||||| | ||| | |||||| ||||||||||| ||||| |||||||| Sbjct 179083 CGACCGGAATGCCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTATC 179142 Query 40705 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 || || |||| || |||| | ||||||||| Sbjct 179143 CCGAATAGTTCATCCGGGTGATGACATCGATCTCG 179177 Score = 98.7 bits (108), Expect = 3e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595 || |||| ||| || || | |||| || |||||||| ||||| |||||||| || | Sbjct 178019 CTGCTTGTCCATTTCCGCGCGGATCTTTTTACCCATCGCGCGGCGCAGCAGGTCAGCATC 178078 Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 ||||| | ||| ||||||||||||||||| | || | |||||| ||||| |||||||| Sbjct 178079 CCCGAGCGAGTAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 178138 Query 39656 GA 39657 || Sbjct 178139 GA 178140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163774372578056