Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq32030 143 9e-30 seq34751 122 3e-23 >seq32030 Length=166927 Score = 143 bits (158), Expect = 9e-30 Identities = 290/427 (68%), Gaps = 10/427 (2%) Strand=Plus/Minus Query 40625 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCTGCGTCCTT 40681 ||| || ||||| ||| |||||| ||||| | | || |||||| | |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCGGCCGACGTCGCG 86138 Query 40682 CATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCC 40741 || | | |||||||| | | ||| | || |||||||||||||| |||| || Sbjct 86137 CAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGCC 86078 Query 40742 GTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATG 40799 ||| | | ||||| |||||||||||| || || || | || ||| |||||| Sbjct 86077 GTAGCGCTGCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGATG 86020 Query 40800 TCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGC 40859 |||| || ||||| || ||||| ||||| || ||||| |||||||| | || ||| | Sbjct 86019 TCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAAC 85960 Query 40860 TCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAG 40919 | | ||| |||||||||||||| || | | ||||||||||| ||||| | ||| Sbjct 85959 TTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGAG 85900 Query 40920 CCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACG 40979 || || || || ||||| | ||| | ||| ||||| ||||||||| | ||| Sbjct 85899 CCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACACG 85840 Query 40980 ACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGC 41039 | |||||||| || | | ||| || |||| | ||| | |||| | |||| || Sbjct 85839 ATCAGGAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCCAGCTCGAAGGCGAGCCGC 85780 Query 41040 TTGCCGT 41046 ||| ||| Sbjct 85779 TTGGCGT 85773 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 ||||||||||||| || ||||| || |||||||| | ||||| | || || | ||| | Sbjct 86927 TCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGTCGCCGAGCGAATAGCCCGACATCA 86868 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966 |||| || | || | ||| || |||||||||||||||| ||||||| | ||||| Sbjct 86867 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCGAAGGTCTCTTTCAGGA 86808 Query 39967 TC 39968 || Sbjct 86807 TC 86806 >seq34751 Length=230815 Score = 122 bits (134), Expect = 3e-23 Identities = 193/275 (70%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 40755 ACGTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40812 ||||| ||||||||||||| || || || | || |||||||||||||| || |||| Sbjct 178905 ACGTAGCGGATCACCTCGCCGCGCCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 178962 Query 40813 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40872 | || ||||| || || || ||||| |||||||| | || ||| | | ||| |||| Sbjct 178963 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGA 179022 Query 40873 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40932 ||||||| || | |||| || |||||||| || || | || || || || || | Sbjct 179023 GGTCGGTAATGGTCAATGCGTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCC 179082 Query 40933 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40992 ||||| | ||| | |||||| ||||||||||| ||||| |||||||| Sbjct 179083 CGACCGGAATGCCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTATC 179142 Query 40993 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 || || |||| || |||| | ||||||||| Sbjct 179143 CCGAATAGTTCATCCGGGTGATGACATCGATCTCG 179177 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 || |||| ||| || || | |||| || |||||||| ||||| |||||||| || | Sbjct 178019 CTGCTTGTCCATTTCCGCGCGGATCTTTTTACCCATCGCGCGGCGCAGCAGGTCAGCATC 178078 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 ||||| | ||| |||||||||||||| || | || | ||| || ||||| |||||||| Sbjct 178079 CCCGAGCGAGTAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 178138 Query 39944 GA 39945 || Sbjct 178139 GA 178140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164733725719256