Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq54303 311 4e-80 seq55957 306 2e-78 >seq54303 Length=793959 Score = 311 bits (344), Expect = 4e-80 Identities = 533/763 (70%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 65073 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TACCCGAGGGGCCGG 65131 || ||||||| ||| || || ||| || |||||||| || | ||| |||||| | Sbjct 1494 CCTCCGGCTCCCTCGGGCTTGATATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGC-GT 1552 Query 65132 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 65191 || || || |||||||| || ||||| || || ||| | || ||| || || ||||| Sbjct 1553 GTCGTCGAGATCTACGGGCCGGAATCGTCGGGCAAGACGACGCTGGCGCTGCATACGGTG 1612 Query 65192 GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGAC 65251 || | ||||||||| || |||| ||||| |||||||| |||||| | || ||| Sbjct 1613 GCGGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTATCGACGCCGAGCACGCGCTCGAC 1672 Query 65252 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGAC 65311 || | || ||| ||| || || || ||||| | || || | ||||| ||| Sbjct 1673 CCGGTCTATGCCCGCAAGCTGGGCGTCAACATCGACGAGCTGCTGATCTCGCAGCCCGAC 1732 Query 65312 ACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CA 65369 || ||||||||||| ||||||||| ||| | | || || | | || ||| | Sbjct 1733 ACCGGCGAGCAGGCGCTGGAGATCTGCGACACCTTGGTGCGCTCCG--GTGCCGTCGACG 1790 Query 65370 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 65429 | |||| || || || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 1791 TTCTCGTGGTCGATTCGGTCGCGGCGCTGGTGCCGAAGGCCGAGCTCGAGGGCGAGATGG 1850 Query 65430 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 65489 | ||| | |||||||| || ||| | ||| ||||| | ||||||||||| | Sbjct 1851 GCGACGCGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTACGCAAGCTCACGG 1910 Query 65490 GCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 65549 | ||||| || |||||||| || | ||| |||||||| | ||| |||||||| Sbjct 1911 CCTCCATCAACAAGTCCAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCG 1970 Query 65550 GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACG 65609 | |||| |||||| || || || ||||| |||||||| || ||| ||||||| Sbjct 1971 G---CGTGATGTACGGCTCGCCTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACG 2027 Query 65610 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 65669 ||||||||||| | || |||| ||||||| | | ||||| | || |||| |||| Sbjct 2028 CCTCAGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGGAGCGTGACGAGGTGGTCG 2087 Query 65670 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGC-- 65727 ||||| ||| || || ||||| || ||||||||||||| |||||| | ||| || Sbjct 2088 GCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGG---CGCCGCCCTTCAA-GCAG 2143 Query 65728 --CGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCT 65784 ||||||| | || ||||||| |||||| |||| | || || || ||||||| || Sbjct 2144 ATCGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGATGGGTGAGATCCTCGATCT 2202 Query 65785 GGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 65827 | ||| | ||| | || ||||||| |||||||||||| Sbjct 2203 CGGCGTCAAGGCCGGCATCGTCGAGAAGTCCGGCGCCTGGTTC 2245 >seq55957 Length=247269 Score = 306 bits (338), Expect = 2e-78 Identities = 577/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 65069 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65128 ||| || | ||||| | | |||||| ||| ||||||||||| || | || | ||| Sbjct 173989 ATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCCAAGGGG 174048 Query 65129 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65188 |||||| | || || ||||| || ||||| || || ||| |||| ||| || ||| Sbjct 174049 CGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTGCACTGC 174108 Query 65189 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65248 ||||| | || |||||| || |||| | ||||| |||||| || || ||| | || Sbjct 174109 GTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACACGCGCTC 174168 Query 65249 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65308 ||||| | || ||| |||||| || | |||| | || || | ||||| Sbjct 174169 GACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCGCAGCCC 174228 Query 65309 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 65368 ||| ||||||||||| ||||| |||| ||| || || || |||| | ||| Sbjct 174229 GACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG--GTCG 174286 Query 65369 ATCGTCG--TCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65426 || | |||| ||||| ||||| || || |||||||||||||| ||||||||||| | Sbjct 174287 ATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGCGAGA 174346 Query 65427 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65486 | || || || | || ||||| ||||| || ||| ||||| |||||||||| | Sbjct 174347 TGGGCGATAGCCTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGA 174406 Query 65487 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 65546 ||| | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 174407 CCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 174466 Query 65547 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 65606 |||| ||| |||||| || || |||||||| |||||||| || ||| ||||| Sbjct 174467 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCT 174523 Query 65607 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 65665 |||| || || ||| | || |||| ||||||| | | || ||||| |||| || | Sbjct 174524 ACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGACGAAGTC 174582 Query 65666 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 65725 ||||||||| ||||| || ||||| || |||||||||||||| |||||| | | Sbjct 174583 GTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAG 174642 Query 65726 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 65785 | ||| ||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 174643 GTCGAATTCGACATCATGTACGGCGAGGGCGTCTCGAAGATGGGCGAAATTCTCGATCTC 174702 Query 65786 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAAC 65845 | ||| | ||| | || ||||||| |||||||||||| || | | || | Sbjct 174703 GGCGTCAAGGCCGGCATTGTCGAGAAGTCCGGCGCCTGGTTCTCCTATGACAGCCAGCGC 174762 Query 65846 GTCGCTCAGGGC------AAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACATC 65899 ||| ||||||| || ||||||| || || ||||| ||||| || ||| Sbjct 174763 CTCGGTCAGGGCCGCGAAAACTCCAAGGC------GTTCCTGAAGGCGAACCCCGAAATC 174816 Query 65900 ACCG 65903 |||| Sbjct 174817 ACCG 174820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242062887232214