Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25496 96.9 1e-14 >seq25496 Length=18307 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || ||||| || ||||| | ||||||||||| || |||||||| | ||| Sbjct 6322 GTCTTCACGGCCGTATCGATCAGACCCTCGCGACCACCCATGGCGTGGAAGAAGAACTCC 6263 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGAAT 302737 | ||| || || | | | ||| |||| ||||| || |||| ||| || |||| Sbjct 6262 TGCGGGGTGAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCGCGCGACTCCGGGCCGAA- 6204 Query 302738 CGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTC 302797 |||| ||| ||||| ||||| || | || ||| | | ||||| ||||| | Sbjct 6203 -GTCGTCCTTCACGAAGTGCGGCAGCGTTCGGTCGCGGAAGCAGAAGGGGATGCGCTTGC 6145 Query 302798 CATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCT 302857 | || ||||||||||| |||| ||| | | || |||||| || || | | |||| Sbjct 6144 CCTCGACGTTCTGCTGACCCACGCAGGCGAGCACCTGCGAGATGTTGATGGCCGAACCCT 6085 Query 302858 TGGAGCCAGCATTTACCAT 302876 |||| || ||| | ||||| Sbjct 6084 TGGACCCGGCAATCACCAT 6066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470747578486054