Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq32030 143 9e-30 seq34751 113 1e-20 >seq32030 Length=166927 Score = 143 bits (158), Expect = 9e-30 Identities = 292/428 (68%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 40085 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCGAGCACGCGAGCCG-CGTCCT 40140 ||| || ||||| ||| |||||| ||||| | | ||| ||||| |||| |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCG-GCCGACGTCGC 86139 Query 40141 TCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCC 40200 || | | |||||||| | | ||| | || |||||||||||||| |||| | Sbjct 86138 GCAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGC 86079 Query 40201 CGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGAT 40258 |||| | | ||||| ||| |||||||| || || || | || ||| ||||| Sbjct 86078 CGTAGCGCTGCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGAT 86021 Query 40259 GTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTG 40318 ||||| || ||||| || ||||| ||||| || |||||||||||||| | || ||| Sbjct 86020 GTCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 85961 Query 40319 CTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGA 40378 || | ||| |||||||||||||| || | | ||||||||||| ||||| | || Sbjct 85960 CTTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGA 85901 Query 40379 GCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGAC 40438 ||| || || || ||||| | || | ||| ||||| ||||||||| | || Sbjct 85900 GCCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACAC 85841 Query 40439 GACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTG 40498 || |||||||| || | | ||| || |||| | ||| | |||| | |||| | Sbjct 85840 GATCAGGAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCCAGCTCGAAGGCGAGCCG 85781 Query 40499 CTTGCCGT 40506 |||| ||| Sbjct 85780 CTTGGCGT 85773 >seq34751 Length=230815 Score = 113 bits (124), Expect = 1e-20 Identities = 191/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 40215 ACGTACTGGATGACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCA 40272 ||||| |||| |||||||| || || || | || |||||||||||||| || |||| Sbjct 178905 ACGTAGCGGATCACCTCGCCGCGCCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCA 178962 Query 40273 TGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGA 40332 | || ||||| || || || |||||||||||||| | || ||| | | ||| |||| Sbjct 178963 TCGAGACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGA 179022 Query 40333 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGC 40392 ||||||| || | |||| || |||||||| || || | || || || || || | Sbjct 179023 GGTCGGTAATGGTCAATGCGTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCC 179082 Query 40393 CGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40452 ||||| | || | |||||| ||||||||||| ||||| |||||||| Sbjct 179083 CGACCGGAATGCCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTATC 179142 Query 40453 ACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 || | |||| || |||| | ||||||||| Sbjct 179143 CCGAATAGTTCATCCGGGTGATGACATCGATCTCG 179177 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 39284 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39343 || |||| ||| || || | |||| || |||||||| ||||| |||||||| || | Sbjct 178019 CTGCTTGTCCATTTCCGCGCGGATCTTTTTACCCATCGCGCGGCGCAGCAGGTCAGCATC 178078 Query 39344 ACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 || || | ||| |||||||||||||| || | || | |||||| ||||| |||||||| Sbjct 178079 CCCGAGCGAGTAGCCGGCCATGACCTGCGCGATCTGCATCACCTGTTCCTGATAGATGAT 178138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163214749912356