Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq32030 129 5e-25 seq34751 105 6e-18 >seq32030 Length=166927 Score = 129 bits (142), Expect = 5e-25 Identities = 201/284 (71%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 105020 CATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGC 105079 ||||||| ||| ||| | ||| || |||||| |||| |||||| || ||| ||||| Sbjct 85804 CATCACCCGCATGAAATACGCGGGCTACTTCCTGATCGTGTCCGACTTCATCAAATGGGC 85863 Query 105080 TAAGGACC---GCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTC 105136 ||| || |||| | |||||| || ||||| || || | || |||||||| ||| | Sbjct 85864 AAAGAGCCAAGGCATTCCCGTCGGGCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTCGC 85923 Query 105137 GTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTT 105196 || | || ||||||||| ||||| |||||||||| || |||| |||||||||| || Sbjct 85924 GTGGGCGCTGACCATCACCGACCTCGATCCGATCAAGTTCGGCCTGCTGTTCGAGCGCTT 85983 Query 105197 CATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCG 105256 | || || || || | || ||| |||| |||| ||| ||| | || || Sbjct 85984 CCTCAATCCCGAACGCGTCTCGATGCCGGACTTCGACATCGATTTCTGCCAGGATCGCCG 86043 Query 105257 CGGCGAGGTCGTCGACTACATCGCCG-ACCGCTACGGCCACGAC 105299 ||||||||| || ||| | || | | |||||||||| |||| Sbjct 86044 CGGCGAGGTGATCAGTTACGT-GCAGCAGCGCTACGGCCGCGAC 86086 >seq34751 Length=230815 Score = 105 bits (116), Expect = 6e-18 Identities = 193/282 (68%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 105020 CATCACCAGCAAGAACTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGC 105079 ||||||| | | ||||| | || |||||| ||||| | |||| || |||| || Sbjct 179165 CATCACCCGGATGAACTATTCGGGATACTTCCTGATCGTCTCGGACTTCATCAAGCATGC 179106 Query 105080 TAAG---GACCGCATGCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTC 105136 ||| || |||| | ||||| || ||||| ||||||| || |||||||| || | Sbjct 179105 GAAGTCCGAGGGCATTCCGGTCGGGCCGGGCCGCGGTTCGGGCGCAGGCTCGCTGGTGGC 179046 Query 105137 GTACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTT 105196 ||| || ||| ||||| ||||| |||||| || || ||| |||||||||| || Sbjct 179045 TTACGCATTGACCATTACCGACCTCGATCCGATCCGGTTCGGTCTGCTGTTCGAGCGCTT 178986 Query 105197 CATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCG 105256 | || ||||| || | || ||| |||| |||||||| ||| | || || Sbjct 178985 CCTCAATCCGGAACGCGTCTCGATGCCGGACTTCGACATCGACTTCTGTCAGGACCGGCG 178926 Query 105257 CGGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCCACGA 105298 ||||||||| || |||| | || |||||||||| ||| Sbjct 178925 CGGCGAGGTGATCCGCTACGTGCAGGAGCGCTACGGCCGCGA 178884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455750118397360