Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq27440 154 2e-32 seq54491 141 1e-28 >seq27440 Length=426762 Score = 154 bits (170), Expect = 2e-32 Identities = 188/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 98945 GAAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA 99004 ||||| || || ||||| || |||||||| || | |||||||| || ||||| ||||| Sbjct 328876 GAAGACCGATCGGACCGGCACCGGCACGCTCTCGGTATTCGGCCATCAAATGCGCTTCAA 328935 Query 99005 CTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGCGT-TGCCACCTGCGCTCTATTATCC 99063 || || |||||| || | ||||||||||| |||| || | || | | Sbjct 328936 TCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGGCTGCCGT-TGAAGGCGATCGTGC 328994 Query 99064 ATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTG 99123 |||| ||||| ||||||||||| ||||||||||| ||| | |||||| || || || | Sbjct 328995 ATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATCAAATACCTGCGCGACAACGGCG 329054 Query 99124 TAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGC 99183 | ||||| |||||||| |||||||| |||||||| ||||| ||||| || || | | Sbjct 329055 TCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCATC 329114 Query 99184 AGTGGCGGGCATGG 99197 ||||||| ||||| Sbjct 329115 AGTGGCGCTCATGG 329128 >seq54491 Length=272697 Score = 141 bits (156), Expect = 1e-28 Identities = 189/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| ||||| ||||| || || || | || | ||||| || |||||||| ||||| Sbjct 166568 AAGACCGACCGCACCGGCACCGGGACCTTGTCCGTGTTCGGACATCAGATGCGCTTCAAT 166509 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCA 99064 || | || || ||| || | ||||||||| | |||| | || || || | || Sbjct 166508 CTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAGCTGCCGC-TGAAATCCATCGTACA 166450 Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124 ||||||||| ||||| || ||||||||||| ||| | ||||||||||| | || || Sbjct 166449 TGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATCAAATACCTGAAAGACCACGGCGT 166390 Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184 | || ||||| |||||||||||| |||||||| ||||| || || ||||| ||| Sbjct 166389 CTCGATCTGGGATGAATGGGCGGACGCCAATGGCGATCTCGGCCCAGTCTACGGATCGCA 166330 Query 99185 GTGGCGGGCATGGACTGCGC 99204 |||||| | ||| |||||| Sbjct 166329 GTGGCGCTCGTGGCCTGCGC 166310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716128507433680