Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq34749 226 1e-54 seq24074 197 5e-46 seq36931 156 1e-33 seq56171 91.5 5e-14 >seq34749 Length=109604 Score = 226 bits (250), Expect = 1e-54 Identities = 268/362 (74%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 31445 CCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCG 31504 |||| || || | ||||||||| |||||||| | ||||||| | || || |||||| Sbjct 1572 CCACTGCTCTTGCCGTCGAGCATCGTCAGCGTGGAATTGAAGTTCTGCAGGACGACTTCG 1513 Query 31505 GTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCG 31564 || | |||||||| ||||| || |||||| || ||||| || |||| ||||||| Sbjct 1512 GTCGAATAGCGATCCTTGCCGTCCTTGTCCTGCCATTTTCGGGTCTGGAGCTGGCCCTCG 1453 Query 31565 ATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTG 31624 || |||||||| || ||||| ||||| ||||||||| || |||| ||||||||| | Sbjct 1452 ATATAAACCTTGGAGCCCTTCTTCAGATATTGCTCGGCAATCTTGCAGAGACCTTCACTA 1393 Query 31625 AAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGC 31684 |||| ||||||| |||||| || || || || || |||||| || ||||||| Sbjct 1392 AAGATCACGACGCGATGCCATTCCGTCTTTTCTTTCCGCTCGCCGGAGTTCTTGTCGCGC 1333 Query 31685 CAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGT---CTTT 31741 ||| | || || ||||||| || || ||||||| || ||| | || || ||| Sbjct 1332 CAGGTATCCGAGGTCGCAACGCTCAGATTGGCGATCGGACGACCGTCCTGCGTGCGCTT- 1274 Query 31742 CGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCC 31801 |||||| || ||||||||||||| |||| ||||||||||| |||||||| || ||| Sbjct 1273 --GATTTCAGGGTCGGCGCCGAGATTTCCGACCAGAATGACTTTATTGACGCTTCCCGCC 1216 Query 31802 AT 31803 || Sbjct 1215 AT 1214 >seq24074 Length=235507 Score = 197 bits (218), Expect = 5e-46 Identities = 262/361 (73%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 31445 CCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCG 31504 || ||||| | | ||||||||| ||||| |||| |||||||| | | ||| |||||| Sbjct 182206 CCTCCGCCGCGGCCGTCGAGCATTGTCAGGGTCGAGTTGAAGCCCTGGAGCACGACTTCG 182265 Query 31505 GTTGTGTAGCGATCACCACCG-TCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTC 31563 || | || || | || || | | | |||||||||||| |||||| |||||| Sbjct 182266 GTAGAATACTTCTCCACGCCACTCTGGTCGGT-CCACTTGCGGGTCTGCAGCGCGCCCTC 182324 Query 31564 GATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGT 31623 |||||| ||||||| ||||| ||||| || |||||| |||||| || ||||| | Sbjct 182325 GATGTAGACCTTCGCGCCCTTCTTCAGATACTGCTCGGCGACCTTGCAAAGCCCTTCATT 182384 Query 31624 GAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCG 31683 ||||| ||||||| |||||||||||| ||||||||| |||||| ||| ||| || Sbjct 182385 GAAGATCACGACGCGATGCCACTCGGTCTTCTCCTTGCGCTCGCCGGTGTTCTTGTCACG 182444 Query 31684 CCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCG 31743 ||| | || || || || | || || | ||||| | |||| | || ||| || Sbjct 182445 CCACGTCTCCGAGGTGGCGATGCTCAGATTTGCGATCGGCCGCCCGTCCTGGGTCCGGCG 182504 Query 31744 GATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 |||||| ||||| |||||||| || | |||||||| ||||||||||| || ||||| Sbjct 182505 GATTTCAGGATCCTTGCCGAGATTTCCAACCAGAATGACCTTGTTGACGCTTCCCGCCAT 182564 Query 31804 C 31804 | Sbjct 182565 C 182565 >seq36931 Length=650932 Score = 156 bits (172), Expect = 1e-33 Identities = 256/364 (70%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 32642 CGCATGCGTTCGGCGCGTTTGGTGAGAATCTGAAAGGTGTGTTGCGGCGCCAGAGCCATC 32701 ||||| | | | || || || || || | |||||| || || ||||| ||||| |||||| Sbjct 421529 CGCATCCTTGCTGCACGCTTCGTCAGCACCTGAAACGTATGCTGCGGTGCCAGCGCCATC 421470 Query 32702 ACGGCAAAGACCTTGTCGATCCATTCATCCGGTACGTTTTCGGCAAAAAGATCGCCGTGT 32761 || || ||||| ||||||||| | || || ||||| || || |||||||| || Sbjct 421469 ACCGCGAAGACGCGGTCGATCCAGGCGTCTGGCACGTTCTCATGGAAGAGATCGCCATGG 421410 Query 32762 GCGCAGACGAAAATCATTCGTGGCCGCTTCCATTCGAGCGGTTGAAGCAGCCATTCTTCA 32821 ||||||||||| | ||| || ||| |||||| ||||| || || ||| | || Sbjct 421409 GCGCAGACGAACACCATGCGCGGCTTCTTCCAGGACAGCGGCTGGGTCAACCACTGATCG 421350 Query 32822 TTGAGCCTGACTTTCCCGTTCCACACAGGGCCGGATTTCGAAGGCATCGTTAAGCCTTTC 32881 |||| | || | ||| |||| || || |||| || | ||| || | | | Sbjct 421349 TTGAAGCGCACCTCGCCGGTCCAGACCGGACCGGCCTT----GCTATCCTT-GGTCAGAC 421295 Query 32882 CGGC-TGTCAGTG-TGTTT---CAGACGAGTGCCCGCAAGCTTCATCGCATAGCAGTTGG 32936 |||| | || | || || ||| || ||||| || ||||||||||| |||||||||| Sbjct 421294 CGGCGCGCGAGGGATGGTTCCGCAGCCGCGTGCCGGCGAGCTTCATCGCGTAGCAGTTGG 421235 Query 32937 TGCACCCAGGAGAGACGATGGAGCATCCGGTAATCGGGTTCCACGTCGCGTCCGTCCATT 32996 |||| || || |||| | ||||| || || || || ||||| ||||| |||||||||| Sbjct 421234 TGCAGCCCGGCGAGAGCACCGAGCAGCCCGTGATGGGATTCCATGTCGCATCCGTCCATT 421175 Query 32997 CAAT 33000 | || Sbjct 421174 CGAT 421171 >seq56171 Length=386068 Score = 91.5 bits (100), Expect = 5e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28514 TCGTCTTCCGCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAG 28573 || ||| ||||||||||| ||| ||||||||||| ||| || |||| |||| Sbjct 6578 TCTTCTGTCGCGCTGCCGGAATCCGGATTGGTCACCGACAGCACGAGCTTGCCGGCGGAC 6519 Query 28574 AAGTGGAACTTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCC 28633 | || |||| || |||||||||||| | |||| || || || ||||| || || Sbjct 6518 AGCGCGAGTTTCACGGCGCGGCCGCGCTCGCTGGAAATCGTGGAGACGCGGTCCACCGCG 6459 Query 28634 GAGGCGATTGCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGG 28693 | ||| | || ||| | ||| || || | ||||| || ||||| ||| Sbjct 6458 GCCTCGAAATCCTTCTTGTCGACGATCAGTTCCTTGTCGTTGTTCTGCGGAATGACGCGG 6399 Query 28694 ACGTAGTCCGGGAACGTGCCGTCGATCAGTTTCGA 28728 |||| || ||||| |||||||||||||||||||| Sbjct 6398 CCGTAATCGGGGAATGTGCCGTCGATCAGTTTCGA 6364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169690383615456