Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq55903 87.8 1e-12 seq55630 82.4 6e-11 seq53697 82.4 6e-11 >seq55903 Length=2024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || || | |||||||| ||||||||| |||| ||| | Sbjct 1148 AATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCGAG 1089 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || || ||||| ||||| || ||| | ||| ||||| Sbjct 1088 CGACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 1029 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | || ||||| ||||| ||||| | | | || |||| || ||||| Sbjct 1028 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCCGACTACAA 969 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || || ||| | ||| | ||| Sbjct 968 CATTCAGAAGGAGTCCACGCTCCACCTCGTG 938 >seq55630 Length=2319 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 188 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 129 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||| | ||||| | | || | ||||| ||| Sbjct 128 CACTTCAACCCCTTCGGCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGGC 69 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 68 GATCTCGGCAACGTC 54 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 837 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 778 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||| | ||||| | | || | ||||| ||| Sbjct 777 CACTTCAACCCCTTCGGCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGGC 718 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 717 GATCTCGGCAACGTC 703 >seq53697 Length=5429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 107177 CACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCCGGTGAA 107236 |||||||||||||| ||||| || ||||||| || ||||||||| | ||| || | Sbjct 5274 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 5215 Query 107237 CACTTCAATCCCACATACCAAAATCACGGTGCGCCCGACGCCGTAGAAAGGCACGTCGGC 107296 |||||||| ||| | | || ||||| | ||||| | | || | ||||| ||| Sbjct 5214 CACTTCAACCCCTTCGGCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGGC 5155 Query 107297 GATCTGGGCAACGTC 107311 ||||| ||||||||| Sbjct 5154 GATCTCGGCAACGTC 5140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412556102229806