Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq55957 268 5e-67 seq54303 257 8e-64 >seq55957 Length=247269 Score = 268 bits (296), Expect = 5e-67 Identities = 481/696 (69%), Gaps = 9/696 (1%) Strand=Plus/Plus Query 67562 GACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCG 67621 || || ||| || | |||||| | | |||||| ||| || |||||||| || | || Sbjct 173983 GAGACGATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCC 174042 Query 67622 AGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTC 67681 | ||| ||||| | ||||| ||||| || || || || || ||| ||||| || || Sbjct 174043 AAGGGGCGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTG 174102 Query 67682 CACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACAT 67741 ||| ||||| | ||||||||| || |||| | ||||| |||||| |||||||| Sbjct 174103 CACTGCGTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACAC 174162 Query 67742 TCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTG 67801 | |||||||| | || ||| |||||| || ||||||| | || || || | Sbjct 174163 GCGCTCGACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCG 174222 Query 67802 CAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAG 67861 ||||| ||| ||||||||||| ||||| |||| ||| || || || |||| | Sbjct 174223 CAGCCCGACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG 174282 Query 67862 GTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGG 67921 || | | | |||||||| ||||| || || |||||||| || || |||||||| Sbjct 174283 GTCGATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGC 174342 Query 67922 GACATCGGGGACTCGCACGTC--GGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCA 67979 || || || || | || | || || ||||| || || |||||| ||||| |||||| Sbjct 174343 GAGATGGGCGA-TAGC-CTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCA 174400 Query 67980 AGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCG 68039 ||||||||| |||| || || |||| | | | | || ||| | ||| Sbjct 174401 AGCTGACCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCA 174460 Query 68040 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGC 68099 ||||||||| ||| |||||| || || ||||||||||| || || || ||| Sbjct 174461 TGAAGATCGG---TGTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGA 174517 Query 68100 GCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGGCGAT 68158 |||||||| || ||||| | || ||||| | |||| | | || ||||| |||| Sbjct 174518 AGTTCTACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGAC 174576 Query 68159 GAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCAC 68218 || | ||||||||| || ||||| ||||| || ||||||||||||||||| ||| | Sbjct 174577 GAAGTCGTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTC 174636 Query 68219 CGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGC 68254 |||| || || |||| | |||||||||||| Sbjct 174637 AAGCAGGTCGAATTCGACATCATGTACGGCGAGGGC 174672 >seq54303 Length=793959 Score = 257 bits (284), Expect = 8e-64 Identities = 498/734 (68%), Gaps = 11/734 (1%) Strand=Plus/Plus Query 67597 CGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTC 67656 ||| ||||||||||| || || | ||| || || || ||||||||||| || || || Sbjct 1519 CGCGCTCGGCATCGGCGGCCTGCCCAAGGGGCGTGTCGTCGAGATCTACGGGCCGGAATC 1578 Query 67657 TTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 67716 || || ||| | ||| || || || ||||||| | || |||||| || |||| Sbjct 1579 GTCGGGCAAGACGACGCTGGCGCTGCATACGGTGGCGGAGGCGCAGAAGAAGGGCGGCAT 1638 Query 67717 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 67776 ||||| ||||||||||| || | |||||||| | || ||| ||| || || Sbjct 1639 TTGCGCCTTTATCGACGCCGAGCACGCGCTCGACCCGGTCTATGCCCGCAAGCTGGGCGT 1698 Query 67777 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 67836 | ||||| | || || | |||||| ||||| ||||||||||| ||||||||| Sbjct 1699 CAACATCGACGAGCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAGATCTG 1758 Query 67837 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 67896 ||| | || || || | || | | |||| || || || || ||||| || Sbjct 1759 CGACACCTTGGTGCGCTCCGGTGCCGTCGACGTTCTCGTGGTCGATTCGGTCGCGGCGCT 1818 Query 67897 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 67956 ||||||| ||| |||||||| || || || || ||| ||| |||||||| ||||| Sbjct 1819 GGTGCCGAAGGCCGAGCTCGAGGGCGAGATGGGCGACGCGCTGCCGGGCCTGCAGGCCCG 1878 Query 67957 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 68016 | ||||| ||||| | |||||||| || | | | || || |||||||| | Sbjct 1879 CTTGATGAGCCAGGCGCTACGCAAGCTCACGGCCTCCATCAACAAGTCCAACACGATGGT 1938 Query 68017 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGAC 68076 | | | || ||| | ||| |||||||||| ||| |||||| || ||| || Sbjct 1939 GATCTTCATCAACCAGATCCGCATGAAGATCGGC---GTGATGTACGGCTCGCCTGAAAC 1995 Query 68077 CACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGAT 68136 |||||||| || || || ||| ||||||||||| || || | || ||||| | || Sbjct 1996 GACCACCGGCGGCAATGCGCTGAAATTCTACGCCTCAGTCCGCCTCGACATCCGCCGCAT 2055 Query 68137 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAA 68196 || | | ||||| | || |||| ||||||||| ||||||||| ||||| || || Sbjct 2056 CGGCGCGATCAAGGAGCGTGACGAGGTGGTCGGCAACACCACGCGCGTCAAGGTGGTGAA 2115 Query 68197 GAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 68256 ||||||||||||||| || | ||| ||||| |||| | |||||||||||| | Sbjct 2116 GAACAAGCTGGCGCCGCCCTTCAAGCAGATCGAGTTCGACATCATGTACGGCGAGGGCGT 2175 Query 68257 TTCCCGCGAGGCCGAACTCCTCGACATGGCCGTTTCCCGAGGGC----TCATCAAGAAGT 68312 ||| || || ||||||| | | ||| | ||| | || || |||||| Sbjct 2176 CTCCAAGATGGGTGAGATCCTCGATCTCGGCGT----CAAGGCCGGCATCGTCGAGAAGT 2231 Query 68313 CTGGGGCCTGGTTC 68326 | || ||||||||| Sbjct 2232 CCGGCGCCTGGTTC 2245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247278477930336