Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq54335 98.7 2e-15 seq53174 96.9 6e-15 >seq54335 Length=118188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 120225 TTTGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCG 120284 || ||||| |||||||||||||||||||||||| |||||||||||||||| || ||||| Sbjct 14486 TTAGCCGGCTTAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGCGAGTTCG 14545 Query 120285 ATCCCTGATGCCGGCACCA 120303 | |||| |||||||||| Sbjct 14546 AATCCTGCAGCCGGCACCA 14564 >seq53174 Length=299220 Score = 96.9 bits (106), Expect = 6e-15 Identities = 202/297 (68%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 35460 CCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC-CTCGTC 35518 ||||| || ||| ||||||||| | |||||| || || | || ||||| || || Sbjct 123300 CCCGT-TGCCCCATGTATTTACCACTGCGATCAGCATAAGAAACCTCACAGTCACTGGTT 123242 Query 35519 ACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTT 35578 || | ||||| || | ||| || ||||| || || || | || ||||| Sbjct 123241 CCTTTT-AAAAATAGAAACTGGCATACCCCTTCATTAGCATAGATTTTAGCAGGCAGCGG 123183 Query 35579 GGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCAC 35638 || || || ||||| || || ||||| |||||||| || ||||| ||||| ||||| Sbjct 123182 CGTTGTATTCGAAAACTCAAGCGTGACATGGCCTTCCCATTCGGGTTCAAGCGGTGTCAC 123123 Query 35639 GTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTT 35698 ||| || || || || || || || || || ||||||||||| | || | || | Sbjct 123122 GTTAACAATAATGCCGCACCGAGCATAAGTTGATTTACCCAAACAAATAACTAACACATC 123063 Query 35699 GCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755 || |||||||| || ||||| || ||||| || | | || || || ||||| || Sbjct 123062 CCGGGGAATGCGAAAATATTCAACAGTGCGCGCTAACACAAAACTATTAGGCGGGAT 123006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825330997861680