Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq24074 89.7 1e-13 seq33993 82.4 2e-11 seq31605 80.6 7e-11 >seq24074 Length=235507 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/172 (73%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 23496 CCACTTGCGTGTCTGCAGCTTGCCGATGATCGCG-CATTCACTTCCCTTGCGCAGATACT 23554 ||||||||| ||||||||| ||| ||| | | ||| | ||||| |||||||| Sbjct 182298 CCACTTGCGGGTCTGCAGCGCGCCCTCGATGTAGACCTTCGCG-CCCTTCTTCAGATACT 182356 Query 23555 CGCCGGCAATCTCGGCGA--CCTTGCC-GAAGAACACGACGCGGTGCCATTCGGTCTTTT 23611 |||| | || | | |||| ||||| ||||||||| ||||| |||||||| | Sbjct 182357 GCTCGGCGACCTTGCAAAGCCCTTCATTGAAGATCACGACGCGATGCCACTCGGTCTTCT 182416 Query 23612 CCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCT 23663 |||||||||||||||| | |||||| ||| || ||||| ||||| | ||| Sbjct 182417 CCTTGCGCTCGCCGGTGTTCTTGTCACGCCACGTCTCCGAGGTGGCGATGCT 182468 >seq33993 Length=82884 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| ||||||| ||||||||| ||||||| || ||| | ||| || |||||||| Sbjct 78702 ATGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATC 78643 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 78642 CAGCTGAGCTACGGG 78628 >seq31605 Length=53511 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 4819 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 4878 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 4879 AGCTGAGCTACGGG 4892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139189349412904