Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq55903 111 1e-19 seq54758 96.9 3e-15 seq55950 93.3 3e-14 seq55630 89.7 4e-13 seq53697 89.7 4e-13 seq46100 87.8 1e-12 seq28750 87.8 1e-12 seq47552 86.0 5e-12 seq29731 82.4 6e-11 >seq55903 Length=2024 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 aaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || || || || | || ||||| ||||||||| |||| ||| | | Sbjct 1148 AATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCGAG 1089 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||||| || || || ||| | ||| ||||| Sbjct 1088 CGACACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCA 1029 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 1028 GCAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCCGACTACAA 969 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| ||| | ||| | ||| Sbjct 968 CATTCAGAAGGAGTCCACGCTCCACCTCGTG 938 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 aTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 478 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCCAGC 419 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | || |||||| Sbjct 418 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGATCAG 359 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || | || ||||||||| Sbjct 358 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 299 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| | ||| Sbjct 298 ATTCAGAAGGAGTCCACCCTCCACCTCGTG 269 >seq54758 Length=5143 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 aaaaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || || || || | || ||||| ||||||||| |||| ||| | Sbjct 3785 AACATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCC 3726 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| ||| ||| | || || || ||||| || || || ||| | ||| || Sbjct 3725 AGCGACACTATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 3666 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || ||||| ||||| ||||||| | || |||| |||||| Sbjct 3665 CAGCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACGCTGGCCGACTAC 3606 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| | ||| Sbjct 3605 AACATCCAGAAGGAGTCGACTCTCCACCTCGTG 3573 >seq55950 Length=6881 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 aaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || || || || | || ||||| ||||||||| |||| ||| | | Sbjct 1150 AATGCAAATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAG 1091 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || |||||||| || || || ||| | ||| ||||| Sbjct 1090 CGACACCATTGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1031 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 1030 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACGCTGGCCGACTACAA 971 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 970 CATCCAGAAGGAGTCCACCCTCCACCTCGTG 940 >seq55630 Length=2319 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 188 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 129 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || || | | || | ||||| || Sbjct 128 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGG 70 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 69 CGATCTCGGCAACGTC 54 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 837 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 778 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || || | | || | ||||| || Sbjct 777 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGG 719 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 718 CGATCTCGGCAACGTC 703 >seq53697 Length=5429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 105087 CACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCCGGCGAG 105146 |||||||| ||||| |||||||||||||| | || |||||||||| | ||| |||| Sbjct 5274 CACGGCTTCCACGTCCACGAGTTCGGCGACAACACCAACGGCTGCGTGAGCGCGGGCGGC 5215 Query 105147 CACTTCAA-CCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCACGTCGG 105205 |||||||| |||| || || | || ||||||| || || | | || | ||||| || Sbjct 5214 CACTTCAACCCCTTCG-GCAAGAAGCACGGCGGACCCGAGGATGAGGAGCGTCACGTTGG 5156 Query 105206 CGACCTGGGCAATGTC 105221 ||| || ||||| ||| Sbjct 5155 CGATCTCGGCAACGTC 5140 >seq46100 Length=1140 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 aaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| ||||||||| |||| ||| | | Sbjct 867 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAG 926 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||||| || || || || | ||| || || Sbjct 927 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 986 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||| | || ||||| ||||| ||||||| | || | || |||||||| Sbjct 987 GCAGCGTCTTATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 1046 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1047 CATCCAGAAGGAGTCCAC 1064 >seq28750 Length=3694 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 aaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || | || ||||| ||||||||| |||| ||| | | Sbjct 3367 AATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAGTCCAG 3426 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || || ||||| || || || || | ||| || || Sbjct 3427 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCA 3486 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 3487 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTGGCCGACTACAA 3546 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | ||| | ||| Sbjct 3547 CATTCAGAAGGAGTCCACCCTCCACCTCGTG 3577 >seq47552 Length=2045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 aaaaTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||| || || || || | || ||||| ||||||||| |||| ||| | Sbjct 1359 AACATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCC 1418 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| ||| ||| | || || || ||||| || || || ||| | ||| ||| Sbjct 1419 AGCGACACTATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGAT 1478 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| || | || |||||| Sbjct 1479 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTAC 1538 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || |||||||| || Sbjct 1539 AACATCCAGAAGGAGTCCAC 1558 >seq29731 Length=5296 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 aTGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| ||| |||| ||| | || Sbjct 5169 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGAGC 5110 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || || | ||| || ||| Sbjct 5109 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAG 5050 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || ||||| ||||| ||||||| | || |||| ||||||||| Sbjct 5049 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 4990 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 4989 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 4960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398600959491238