Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq28750 89.7 4e-13 seq55485 84.2 2e-11 seq36217 84.2 2e-11 >seq28750 Length=3694 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || ||||| || || |||||||| || || || | ||| || Sbjct 3583 ACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTACGGCC 3524 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | ||||| || || ||||||||||| || Sbjct 3523 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTT 3464 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || || | || | ||||| || || || || || || Sbjct 3463 GTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGACTCAACCTCGAGGGTAAT 3404 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| || ||||| ||||||||| Sbjct 3403 GGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATT 3367 >seq55485 Length=2888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || ||||| || || || ||||| || || || | |||||| Sbjct 16 ACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 75 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || ||||| | || | | ||||| || || ||||||||||| || Sbjct 76 GTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTT 135 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||||| ||||| | || | ||||| || || || || || || Sbjct 136 GTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGAT 195 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 196 GGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 231 >seq36217 Length=5138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || ||||| || || |||||||| || || || | ||| || Sbjct 244 ACGGAGAACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCCAGGGTACGGCC 185 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | ||||| || || ||||||||||| || Sbjct 184 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATACCCTCCTT 125 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || || | || | ||||| || || || || || || || Sbjct 124 GTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGAT 65 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || || || |||||||| Sbjct 64 GGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384952804310622