Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023564.1 Length=52974 Score E Sequences producing significant alignments: (Bits) Value seq31657 84.2 7e-12 seq23907 80.6 9e-11 >seq31657 Length=63554 Score = 84.2 bits (92), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 5670 CCCAAGCGGCAAAGGGATCTGACTGTAAATCAGACGCTTC--GGCTTCGCAGGTTCGAGT 5727 ||| || |||||||||| ||||||||||||||| ||| || |||||||||||||||||| Sbjct 60520 CCCGAGTGGCAAAGGGAGCTGACTGTAAATCAGCCGCCTCATGGCTTCGCAGGTTCGAGT 60579 Query 5728 CCTGC 5732 ||||| Sbjct 60580 CCTGC 60584 >seq23907 Length=31623 Score = 80.6 bits (88), Expect = 9e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 5589 TGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGGGTTCCAGGTTCGAGTCCTG 5647 ||||||||||||||||||||| ||||||||||| ||| |||| |||||||||| |||| Sbjct 4684 TGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTG 4742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169281059608544