Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023566.1 Length=56024 Score E Sequences producing significant alignments: (Bits) Value seq34751 131 6e-26 >seq34751 Length=230815 Score = 131 bits (144), Expect = 6e-26 Identities = 370/554 (67%), Gaps = 27/554 (5%) Strand=Plus/Plus Query 205 GAATTCATCATGCATTGGATGGATACATACGATCCACGTAAAAGCGATA---ATAAATGG 261 || ||||||| |||||| ||||| |||||||| ||||| || | ||| | | Sbjct 120578 GAGTTCATCAACCATTGGTGCGATACCTACGATCCTCGTAACGCCGGCACAGATACACCG 120637 Query 262 ------ATACCGTTTGTATTCTTCGCGAAGCAAGCTGAATTTATTACGTTCCTGCATTGC 315 || ||||| | | |||| | ||||| || | | |||||||||| | | Sbjct 120638 GCTCGCATGCCGTTCATTCTGTTCGAGCGGCAAGAAGACCTCGTCACGTTCCTGC-TCGA 120696 Query 316 TTGCG-CACCGATCAGGAAAGCGGGCTGATCGAGAAAGCGCGCGATATGGGCGCTACTTG 374 |||| || || |||||||||| || |||||||| ||||| |||||||| || || Sbjct 120697 TTGCCTCAACGGAGAGGAAAGCGGCCTCGTCGAGAAATGCCGCGACATGGGCGCGACGTG 120756 Query 375 GGGAAGC--TGCGGTTATTCAGTGTGGAGTTGGTTATTCGT-CAAGGATGACG-CAATCG 430 || || ||| | | |||| ||| ||| ||| | ||| ||| | |||| Sbjct 120757 GGTTTGCGTTGCCTTCA--CAGTCTGGCTCTGGCGGTTCTCGCCCGGA--ACGTCGATCG 120812 Query 431 GTTGGGGTTCCCGTAAACAAGAATTGGTTGATAAATTAGGCGATCCGGATAGCATCTTTG 490 | ||||| ||| ||||||| | || || || ||||||| | || |||||||| | Sbjct 120813 GCTGGGGCAGCCGCGAACAAGACCTCGTCGACAAGCTAGGCGACACCGACAGCATCTTCG 120872 Query 491 AAAAGCTGCGGCTGATAATTAATAGATTGCCT---GATATCTGGCGTCCGAAAGGGTTAA 547 ||||| | || || | || | |||| || || || ||| ||||| | Sbjct 120873 AAAAGATTCGAATGCTGATCCGCGGCCTGCCGTCCGAGTTCCTGC--CCGTT-GGGTTCA 120929 Query 548 AGCCGCGCGATCATTTAACGTTTATGAAATGCATCAATCCGGAGAATGGA-GCGACAATT 606 | || || || | |||| ||||| |||||||||| || ||| ||||| || Sbjct 120930 ACCCCAACGTCCACATGTCGTTCATGAAGGTGGTCAATCCGGA-AACGGATGCGACCATC 120988 Query 607 ACCGGTGAAAGCGGCGATAACATCGGTCGCGGCGGTCGAAAATCGATGTATTTTAAGGAT 666 ||||| || | ||||| |||||||||||||| |||||||| ||| | || ||||| Sbjct 120989 ACCGGCGACACTGGCGACAACATCGGTCGCGGTGGTCGAAAGCGGATTTTCTTCAAGGAC 121048 Query 667 GAAAGCGCGCATTATGAACGACCTGAAAAGATAGAAGCGGCGCTTGGTGACAATACACGC 726 || ||||| || | || || || ||||| ||||||||||| | ||||| || ||| Sbjct 121049 GAGTCGGCGCACTACAAGCGGCCCGAGAAGATCGAAGCGGCGCTCGCCGACAACACCCGC 121108 Query 727 GTCCAGGTCGATAT 740 ||||| ||||||| Sbjct 121109 GTCCAAATCGATAT 121122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179034483210744