Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023572.1 Length=42240 Score E Sequences producing significant alignments: (Bits) Value seq36931 96.9 9e-16 >seq36931 Length=650932 Score = 96.9 bits (106), Expect = 9e-16 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 36957 TCGACTGGGTGATCGTCGGCGGTGAATCCGGGCCCGGCGCCCGGCCAATGCACCCCGATT 37016 |||| |||||||| | |||||| ||| ||| | | || || ||||||| ||||||| Sbjct 421919 TCGATTGGGTGATTGCCGGCGGCGAAAGCGGCCGTGAGGCGCGATCAATGCATCCCGATT 421978 Query 37017 GGGCGCGAACGCTGCGCGACCAGTG-CACGGTGGCCGGTGTGCCGTTCCTGTTCAAGCAG 37075 |||||||| |||||||||| ||||| ||| | ||| ||||||||| | |||||||| Sbjct 421979 GGGCGCGATCGCTGCGCGATCAGTGTCAC-GCCGCCAACGTGCCGTTCTTCTTCAAGCAA 422037 Query 37076 TGGGG 37080 ||||| Sbjct 422038 TGGGG 422042 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 36475 GAAGCCGCGCAAGATCTTCGTCAACGCGCAGTCCGACCTGTTCCACGACCAGGTGCCCGA 36534 ||||||||||| | | |||||| ||| || ||| || ||||| || | ||||| || Sbjct 421383 GAAGCCGCGCATGGTGTTCGTCTGCGCCCATGGCGATCTCTTCCATGAGAACGTGCCAGA 421442 Query 36535 CGAGTACATCGCCAAGGTATTCGCGATCATGGCGCTTGCACCCCAGCACACATTCCAGGT 36594 || | |||| | || |||||| | |||||||| ||||| ||||| || || ||||| Sbjct 421443 CGCCTGGATCGACCGCGTCTTCGCGGTGATGGCGCTGGCACCGCAGCATACGTTTCAGGT 421502 Query 36595 GCTCACGAAACG 36606 ||| ||||| || Sbjct 421503 GCTGACGAAGCG 421514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134955404216408