Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq54335 102 8e-17 seq54032 93.3 4e-14 >seq54335 Length=118188 Score = 102 bits (112), Expect = 8e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 148131 TTTGCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCG 148190 || || || ||||||||| |||||||||||||||||||||||||| |||||||| ||||| Sbjct 14486 TTAGCCGGCTTAGCTCAGCTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGCGAGTTCG 14545 Query 148191 AACCCTGCATCCAGCACCA 148209 || |||||| || |||||| Sbjct 14546 AATCCTGCAGCCGGCACCA 14564 >seq54032 Length=526453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 |||| | |||||||||||||||||||||||||| |||||||| ||||||| ||||||| Sbjct 237468 GCTGAAGTAGCTCAGTTGGTAGAGCAACTGATTCGTAATCAGTAGGTCGCAGGTTCGATT 237527 Query 148194 CCTGCATCCAGCACCA 148209 |||| | |||||||| Sbjct 237528 CCTGTCTTCAGCACCA 237543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485684071922880