Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq29118 250 8e-61 >seq29118 Length=70201 Score = 250 bits (276), Expect = 8e-61 Identities = 572/847 (68%), Gaps = 38/847 (4%) Strand=Plus/Plus Query 188758 AAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACA 188817 ||||| || |||| |||||||| || ||||| |||||||| ||||| || |||||| Sbjct 15940 AAATCCAACATTCTGTTAGTTGGGCCCACTGGGAGTGGTAAAACTTTATTAGCCCAAACA 15999 Query 188818 TTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCT 188877 | || ||| | |||| || | | || | || ||||| || |||| ||||| Sbjct 16000 CTTGCACGTATTATTGATGTCCCCTTTACGATGGCAGACGCAACCACTCTAACTGAAGCA 16059 Query 188878 GGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTT--CGTTTAATCCAAGCAGCTGATT 188935 || ||||| || || ||||| || || |||| || || ||| | ||||| || |||| Sbjct 16060 GGCTATGTTGGCGAGGATGTCGAGAA--TATTATTTTACGCTTACTTCAAGCGGCAGATT 16117 Query 188936 ACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTA 188995 | || | || || |||| || || || ||||| || ||||| ||||| ||| || Sbjct 16118 ATAATGTTGAGCGCGCCCAACGAGGTATAGTTTATATAGACGAAGTTGATAAGATTTCTC 16177 Query 188996 GAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTT 189055 | ||||| || | | |||||||| |||||||| ||||| ||||| ||||| || |||| Sbjct 16178 GTAAATCGGATAATCCGTCCATTACTCGAGATGTTTCTGGGGAAGGCGTACAACAGGCTT 16237 Query 189056 TATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACC 189115 |||| || || || |||||||||||||| ||||| || ||||| ||||| || |||| Sbjct 16238 TATTGAAGATTATGGAAGGTACAGTTGCCTCGGTTCCACCACAAGGCGGTCGAAAGCACC 16297 Query 189116 CTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGT 189175 | || |||||| | | || | |||||||| ||||||||||||||| |||||| || | Sbjct 16298 CCCAGCAAGAATTTTTACAAGTTGATACAACAAATATCTTGTTTATTTGTGGTGGTGCTT 16357 Query 189176 TTGATGGTCTTGA---AAACATTATCAAGAGACGCGCTACAAA----ATCAACTTTAGGT 189228 ||| || |||| || |||| ||||| || |||| | | || || Sbjct 16358 TTGCGGGGATTGATCGAATCATT-TCAAG----CCGTGGCAAAGGGGTTGCAATT--GGA 16410 Query 189229 TTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGAT-GACAATAAAGT---ATT 189284 |||| ||| |||| || | | | | ||||| || | || ||| Sbjct 16411 TTTG------GTGCAGAT---GTTC--GGGGGCCT-GAGGATCGAACACCTGGTGAGATT 16458 Query 189285 C--CAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGG 189342 | ||| || | | || ||||| | | |||| ||| ||||| |||||||||||||| Sbjct 16459 CTACAAGATTTAGAGCCTGAAGATCTATTGAAGTTTGGGTTAATCCCAGAATTTATTGGT 16518 Query 189343 CGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCG-AGATGCATTGATTAACATTTT 189401 || | || || || ||||| ||| || | || | | || | |||| | | ||||| Sbjct 16519 CGCTTGCCTGTTATTGCAAC-CTTGACTGATTTAACAGCTGAAGTATTGGTCGAAATTTT 16577 Query 189402 AACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGT 189461 |||| | || |||| ||| | |||| || |||||| | | || || ||||| | || Sbjct 16578 AACTAAACCTAAAAATGCTTTGGTTAAGCAGTATCAGCGACTTTTTGAAATGGAAGATGT 16637 Query 189462 GGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAA 189521 || | ||| | |||| || || |||| | |||| |||| ||| || Sbjct 16638 TAAACTTTCATTTACAGAAGATGCGTTGATGGGGGTTGCTAAAAAAGCAATTGCACGCAA 16697 Query 189522 TACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGA 189581 |||||||| || |||||| ||| ||| | ||| |||| | || ||| ||||| ||| Sbjct 16698 AACTGGTGCCCGTGGATTAAGATCTATTCTAGAAGCTATTCTTTTGGATACAATGTTTGA 16757 Query 189582 AGTTCCA 189588 | | ||| Sbjct 16758 ACTACCA 16764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1590753070194816