Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq56113 82.4 8e-11 >seq56113 Length=2093 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| | || |||||||||||| |||| || || |||| |||| || || || || || Sbjct 1247 CCCCAGATCGGCGACAAGTTCAGTTCGCGTCACGGCC-AGAAGGGTACGGTGGGCATCAT 1305 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||| || ||||||| || | |||| ||||| ||||||||||||||| ||| Sbjct 1306 GTACCGGCAGGAGGACATGCCCTTTAACATCGAG-GGCATCACCCCCGACATCATCGTCA 1364 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCAT 21897 |||| || ||||||||| | |||||||| Sbjct 1365 ACCCGCACGCCATTCCCTCGCGTATGACCAT 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521175680744560