Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_024148.1 Length=50101 Score E Sequences producing significant alignments: (Bits) Value seq43634 86.0 2e-12 seq23907 82.4 2e-11 >seq43634 Length=132559 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 3798 TAGGCGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAG 3857 |||| |||||||||| |||| |||||| ||||||||||| ||| || ||||||||||| Sbjct 101420 TAGGAGCGTAGCTCAGTTGGTAGAGCATCGGTCTCCAAAACCGAGGGTCGCAGGTTCGAG 101479 Query 3858 CCCTGCCGCGTCTGC 3872 ||||||||| |||| Sbjct 101480 CCCTGCCGCTCCTGC 101494 >seq23907 Length=31623 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 3798 TAGGCGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTCGAG 3857 |||| | ||||||||||||| |||||| ||||||||||| ||| || ||||||||||| Sbjct 4678 TAGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAG 4737 Query 3858 CCCTGCCGCGTCTGC 3872 ||||||| | |||| Sbjct 4738 CCCTGCCACTCCTGC 4752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160093654359652