Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq43114 93.3 8e-14 seq18839 91.5 3e-13 seq54362 89.7 1e-12 >seq43114 Length=1161 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| ||||| || || ||||| || || || || | Sbjct 907 CCACCGCGCAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 966 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||| ||||| || | || || || || || Sbjct 967 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCGGGGGGA 1026 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| || || ||||| ||||| || || ||||| || || | | || || Sbjct 1027 ATGCCCTCCTTGTCCTGGATCTTCTGCTTG-ACGTTCTCAATGGTGTCGCTCGACTCGAC 1085 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 1086 CTCGAGGGTGATCGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 1133 >seq18839 Length=217 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 ||||| || || || || || || ||||| || | || || || ||||| || |||||| Sbjct 32 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGAATGCCTTCC 91 Query 82713 TTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 || || || ||||| ||||| || || || ||||| || | | || || || | || Sbjct 92 TTGTCCTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGGGT 150 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| |||| |||||| || || |||||||| Sbjct 151 GATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 189 >seq54362 Length=8978 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | | ||| Sbjct 4572 CGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCG 4631 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || |||||| Sbjct 4632 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTA 4691 Query 82716 TCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| ||||| || || || ||||| || || | || || || | || | Sbjct 4692 TCCTGGATCTTCTGCTTC-ACGTTCTCGATCGTGTCCG-AGCTCTCGACCTCGAGGGTGA 4749 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| ||||| || || |||||||| Sbjct 4750 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981113404875538