Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_025427.1 Length=54506 Score E Sequences producing significant alignments: (Bits) Value seq36931 327 4e-85 seq32030 95.1 4e-15 >seq36931 Length=650932 Score = 327 bits (362), Expect = 4e-85 Identities = 299/376 (80%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 37395 AGATAATCCCGCATCCGTTCCAGACGCTTCGTCAGCACTTGGTATATGTGCTGCGGGGCT 37454 ||||| |||||||| | | ||||||||||||||| || | | |||||||| || Sbjct 421538 AGATAGCGCCGCATCCTTGCTGCACGCTTCGTCAGCACCTGAAACGTATGCTGCGGTGCC 421479 Query 37455 ATCGCCATGACGGCGAAGACCTTGTCGATCCATTCGTCCGGCACGCCCTCGGCGAAGAGA 37514 | |||||| || |||||||| ||||||||| |||| |||||| ||| ||||||| Sbjct 421478 AGCGCCATCACCGCGAAGACGCGGTCGATCCAGGCGTCTGGCACGTTCTCATGGAAGAGA 421419 Query 37515 TCGCCATGGGCGCAGACGAAGATCATCCGCGGGCGCTTCCAGCGAAGCGGCTCGTCGAGC 37574 |||||||||||||||||||| | ||| ||||| ||||||| ||||||| | | | Sbjct 421418 TCGCCATGGGCGCAGACGAACACCATGCGCGGCTTCTTCCAGGACAGCGGCTGGGTCAAC 421359 Query 37575 CACTGCTCATTGAAACGCACCTCGCCGGTCCAGACCGGGCCGGCCTTGGAAGGCTTCGTC 37634 ||||| || ||||| ||||||||||||||||||||||| ||||||||| | ||| ||| Sbjct 421358 CACTGATCGTTGAAGCGCACCTCGCCGGTCCAGACCGGACCGGCCTTGCTATCCTTGGTC 421299 Query 37635 AGACCGGCGCGGCTCGGGTGATGCTTC---AGGCGCGTGCCCGCCAGCTTCATGGCGTAG 37691 ||||||||||| || | |||| ||| || |||||||| || |||||||| |||||| Sbjct 421298 AGACCGGCGCG---CGAGGGATGGTTCCGCAGCCGCGTGCCGGCGAGCTTCATCGCGTAG 421242 Query 37692 CAGTTGGTGCAGCCGGGGGAGACGACGGAACAGCCGGTGATCGGGTTCCAGGTCGCGTCC 37751 |||||||||||||| || |||| || || ||||| ||||| || ||||| ||||| ||| Sbjct 421241 CAGTTGGTGCAGCCCGGCGAGAGCACCGAGCAGCCCGTGATGGGATTCCATGTCGCATCC 421182 Query 37752 GTCCATTCGATCTTGG 37767 |||||||||||||||| Sbjct 421181 GTCCATTCGATCTTGG 421166 >seq32030 Length=166927 Score = 95.1 bits (104), Expect = 4e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 35304 GGGGCGTTGGCGACCTCGAGGAGGATATCGGCGTGGCAGGGCTCGCCGGGCTTGCACCAG 35363 ||||||||||||| ||||||||| | ||||| |||||||| |||| ||| ||||||| Sbjct 16274 GGGGCGTTGGCGATCTCGAGGAGCACGTCGGCATGGCAGGGGGCGCCTGGCGGGCACCAG 16333 Query 35364 CAGGCGAGGTTGATGCCGCGCA 35385 ||||||||||| ||||||||| Sbjct 16334 CAGGCGAGGTTCTTGCCGCGCA 16355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174180156316272