Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq54491 217 1e-51 seq27440 183 3e-41 seq30610 91.5 1e-13 >seq54491 Length=272697 Score = 217 bits (240), Expect = 1e-51 Identities = 394/567 (69%), Gaps = 32/567 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| ||||||||||| ||||||||||| |||||||| | ||| | || |||||| Sbjct 166532 TTCGGACATCAGATGCGCTTCAATCTGGCATCGGGCTTTCCGATGCTCACGACCAAGAAG 166473 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| ||||| || ||| | ||||| || ||||| ||| ||||| || |||||| Sbjct 166472 CTGCCGCTGAAATCCATCGTACATGAACTGCTTTGGTTTCTCGCGGGCGACACCAACATC 166413 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || || || | || ||| |||| |||||||||||||||||| || ||||||||| | Sbjct 166412 AAATACCTGAAAGACCACGGCGTCTCGATCTGGGATGAATGGGCGGACGCCAATGGCGAT 166353 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || |||||||| ||||||| || ||| ||| ||| | || Sbjct 166352 CTCGGCCCAGTCTACGGATCGCAGTGGCGCTCGTGG-----CCT-----GCGCCG--GAC 166305 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGTCT 142542 | | || ||| | ||| ||| || | |||| | ||| | | || | Sbjct 166304 GGCCGCAGCATCGACCAGAT--TTCAAAT----CTGATCGAGA-TGATCCGCAAAA--AT 166254 Query 142543 CCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCA 142602 || |||| ||||| | ||||||| |||||||| || || || |||||| | ||||| Sbjct 166253 CCGGATTCACGTCGCCTGATCGTCAGTGCGTGGAATCCCGCCGACGTCGACAAGATGGCG 166194 Query 142603 CTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACT--CGAAGAAGCGTCTGTCAT 142660 || |||||||||||| ||||||| ||| | |||| || || | || |||| | Sbjct 166193 CTGCCTCCGTGTCACTGCCTGTTCCAGTTCTATGTCG-CTAACGGAAAA----TTGTCCT 166139 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 |||| ||||| ||||||||||| ||| || |||||||| ||||||||||| || || | Sbjct 166138 GCCAACTGTACCAGCGTTCGGCGGACGTATTTCTCGGCGTGCCGTTCAACATCGCGTCCT 166079 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTC--GCGAATGCGGTCTGGAACTCGGAGACTTCGT 142778 | ||||| || || | | | || | | || | || ||| | | ||| |||||||| Sbjct 166078 ATGCGCTGCTGACCATGATGGTGGCGCAGGTGACT--GGGCTGAAGCCCGGCGACTTCGT 166021 Query 142779 CCACACCTTCGGCAATTCGCACATCTA 142805 || | ||||| || |||| |||| Sbjct 166020 GCATTCGCTCGGCGATGCGCATCTCTA 165994 >seq27440 Length=426762 Score = 183 bits (202), Expect = 3e-41 Identities = 387/569 (68%), Gaps = 40/569 (7%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| ||||| ||||| ||||||||| | ||||| || | || | || ||| | Sbjct 328913 TTCGGCCATCAAATGCGCTTCAATCTGTCGACCGGCTTCCCGATGCTGACGACCAAGCGG 328972 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| ||||| ||||| | || || || |||||||| || ||||| || |||||| Sbjct 328973 CTGCCGTTGAAGGCGATCGTGCATGAGCTGCTCTGGTTCCTGAAGGGCGACACCAACATC 329032 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 || || || | ||| || ||||| |||||||| || ||||| |||||||||||| | Sbjct 329033 AAATACCTGCGCGACAACGGCGTCACCATCTGGGACGAGTGGGCGGATGCCAATGGCGAT 329092 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| || ||| || || || Sbjct 329093 CTCGGCCCGGTCTATGGCCATCAGTGGCGCTCATGGCCG-GCCCCG-------------- 329137 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAG--- 142539 |||| | || | | ||||| ||||| |||| | | | ||| ||| ||| Sbjct 329138 GACG-----GCCGCAGC-ATCGACCAGAT-CGCC--AACGTCGTGGACATGATCAAGCGC 329188 Query 142540 TCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATG 142599 ||| | || || || | |||||| | |||||||| || || || |||||| | ||| Sbjct 329189 AATCCGGACTCGCGCCGCCTGATCGTCTCGGCGTGGAATCCGGCCGAGGTCGACAAGATG 329248 Query 142600 GCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCA 142659 || || || ||||| || ||||||| ||| |||||| | ||| ||||| Sbjct 329249 GCGCTGCCGCCGTGCCATTGCCTGTTCCAGTTCTACGTCGCCAACGGCAAG---CTGTCC 329305 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 || ||||| |||||||| || || ||| ||||||||||| || |||||||| || || Sbjct 329306 TGTCAGCTCTATCAGCGCTCCGCCGACGTCTTCCTCGGCGTGCCCTTCAACATCGCCTCC 329365 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTT 142775 ||| |||| ||||| || | | || | ||| | | ||||||| | | ||| || || Sbjct 329366 TACTCGCTGCTCAC-CA--TGA-TGGTGGCGCAGGTCACCGGTCTGAAGCCCGGCGATTT 329421 Query 142776 CGTCCACACCTTCGGCAATTCGCACATCT 142804 ||| || | |||||| | ||| ||||| Sbjct 329422 CGTGCATTCGTTCGGCGA--CGCGCATCT 329448 >seq30610 Length=171584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 148838 TCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAGG 148897 |||||||||| || || |||||||||||||| ||| |||| |||||||||| Sbjct 83462 TCATCGAGCGCATCGAGAAGCTGGAGGAAGAGAAGAAGACCATCAGCGACGACATCAAGG 83403 Query 148898 ACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCATCA 148957 ||||||| || || ||||| || || ||||||||| |||| || | | ||| Sbjct 83402 ACGTCTATGGTGAAGCCAAGGGCAACGGCTTCGACGTCAAGGCGCTGCGCACCATTATCC 83343 Query 148958 ACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 ||| |||||| |||| | | ||||| |||| |||| | ||||| || || || Sbjct 83342 GCATGCGCAAGCAGGACGCCGACGAGCGTCAGGAACAGGAGACGATCCTGGAAACCTA 83285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500144208429920