Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq27440 172 6e-38 seq54491 127 2e-24 >seq27440 Length=426762 Score = 172 bits (190), Expect = 6e-38 Identities = 197/265 (74%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||||| ||||||| |||| |||||||| || | | ||||| || || || |||| Sbjct 329468 GCTCCAGGTGGTTGGAATAGAGATGCGCGTCGCCGAACGAATGCACGAAATCGCCGGGCT 329409 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 | || ||||| || || |||||||| |||||||||||||||| ||| |||||||||| Sbjct 329408 TCAGACCGGTGACCTGCGCCACCATCATGGTGAGCAGCGAGTAGGAGGCGATGTTGAAGG 329349 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || || ||| | ||| | || | ||| || ||||| || || |||| |||| || Sbjct 329348 GCACGCCGAGGAAGACGTCGGCGGAGCGCTGATAGAGCTGACAGGACAGCTTGCCGTTGG 329289 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 | ||||| |||||| ||||| |||||||||||||||||||| | | || || | Sbjct 329288 CGACGTAGAACTGGAACAGGCAATGGCACGGCGGCAGCGCCATCTTGTCGACCTCGGCCG 329229 Query 147164 GGTTCCAGGCCGAGACCACCAGCCG 147188 | ||||| |||||||| | ||| || Sbjct 329228 GATTCCACGCCGAGACGATCAGGCG 329204 >seq54491 Length=272697 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146941 TAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGG 147000 |||| ||||| || || || | ||||| ||||| || ||||| || || ||||| || Sbjct 165994 TAGAGATGCGCATCGCCGAGCGAATGCACGAAGTCGCCGGGCTTCAGCCCAGTCACCTGC 166053 Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||||||| ||| ||||||| ||| || |||||||| || || || || | | Sbjct 166054 GCCACCATCATGGTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGAAATACG 166113 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCAC 147120 ||| |||| | ||||||||| ||||| || | | |||| || || || |||||| || Sbjct 166114 TCCGCCGAACGCTGGTACAGTTGGCAGGACAATTTTCCGTTAGCGACATAGAACTGGAAC 166173 Query 147121 AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 ||| ||| ||||| ||||||||||| | | ||| ||||| ||||| || Sbjct 166174 AGGCAGTGACACGGAGGCAGCGCCATCTTGTCGACGTCGGCGGGATTCCACGC 166226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583074146548800