Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_026589.1 Length=55832 Score E Sequences producing significant alignments: (Bits) Value seq36931 116 1e-21 >seq36931 Length=650932 Score = 116 bits (128), Expect = 1e-21 Identities = 232/338 (69%), Gaps = 22/338 (7%) Strand=Plus/Plus Query 46269 GGCAGTGGCCGCTGCCGAATGTGTGGCTGGGCGTCTCTACCGAGAATCAGCGGTCGGCCG 46328 ||| || |||||| |||| |||||||| ||||| || | || |||| | ||| Sbjct 421712 GGCCGTTACCGCTGGCGAACGTGTGGCTCGGCGTTTCCGCGGAACGGCAGCAGGAGGCGA 421771 Query 46329 ACATCCGGATTCCCGCGTTGCTCGACACCCCGGCCGCGGTCCGGTTCATCAGCGCCGAA- 46387 || || ||||| | | |||||| || ||||||||||| ||||| | ||| | | Sbjct 421772 ACGAACGCATTCCGGAGCTGCTCGCAACGCCGGCCGCGGTACGGTTTGTGT-CGCTGGAG 421830 Query 46388 CCACTTCTCGGGCCTATCGACCT-----CCA---CGCTGATCCGATCGGGAAGGACTCG- 46438 || || |||||||| ||||| || ||| ||| | ||| | | | || || Sbjct 421831 CCGCTGCTCGGGCCAATCGATCTGACGGCCATTCCGCGCACGCGAGCAG-AGGGCTTCAT 421889 Query 46439 --GTGTTCTGGATCGGC-------CA-CCTCGATTGGGTGATCGTCGGCGGCGAATCCGG 46488 || || || ||| || ||||||||||||||| | |||||||||| ||| Sbjct 421890 GCGTCCGCTCGACGGGCGCTTTCGCATCCTCGATTGGGTGATTGCCGGCGGCGAAAGCGG 421949 Query 46489 CCCCGGCGCCCGGCCGATGCACCCCGACTGGGCGCGGTCGCTGCGCGATCAATGCCGGAT 46548 || | || || | ||||| ||||| |||||||| |||||||||||||| || | Sbjct 421950 CCGTGAGGCGCGATCAATGCATCCCGATTGGGCGCGATCGCTGCGCGATCAGTGTCACGC 422009 Query 46549 CGCCGGTGTGCCGTTCCTGTTCAAGCAGTGGGGTGAGT 46586 |||| ||||||||| | |||||||| ||||| |||| Sbjct 422010 CGCCAACGTGCCGTTCTTCTTCAAGCAATGGGGCGAGT 422047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 178420497200376