Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq24082 118 4e-22 seq48397 105 2e-18 seq55600 87.8 6e-13 seq56171 80.6 1e-10 >seq24082 Length=208990 Score = 118 bits (130), Expect = 4e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234 |||||||||||||| | ||||||||| ||||||||||| ||||| || |||||||| ||| Sbjct 158828 TTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACATCGCCGAG 158769 Query 4235 AACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAAG 4294 ||| || || ||| |||||||||| |||||||||||||| |||| || Sbjct 158768 GGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGTCATGCGC 158709 Query 4295 ACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTAC 4339 | |||||| ||| || | ||| |||||| |||||||||| Sbjct 158708 AACAAGGGTTGCGACGACGCGTCCACCATCCACTCGCTGATCTAC 158664 Score = 98.7 bits (108), Expect = 4e-16 Identities = 312/476 (66%), Gaps = 16/476 (3%) Strand=Plus/Minus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGA---CGAGTCGGTCGGTGAA 4573 ||||||||||| | || | ||||| | || |||||||| ||| | || || | Sbjct 158600 AAGGCCAAGCTGATCGTCATCGACGAATGCTCGATGGTCGATGCCGAATTGG--GGCGC- 158544 Query 4574 GACCTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCG 4633 ||| | ||||||||| || || | | |||||||| ||||| |||||||||||| Sbjct 158543 GACTTGATGTCGTTCGACTGCCCTCTCTTGGTGCTGGGCGATCCCGCGCAGCTGCCGCCG 158484 Query 4634 GTGGCCGGGGCTG--GATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCC 4691 | || |||| | | ||||||||||| | || | || |||||||||| | | Sbjct 158483 AT--CCAGGGCGGCGGCTTCTTCACCAATTCGGAGCCGGATGCGATGCTGACCGAGGTGC 158426 Query 4692 ACCGCCAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGGTGGAA 4751 | || ||||||| ||| | || ||| | ||||||| |||| | || ||| | Sbjct 158425 ATCGTCAGGCCCAGGACGATCCGATCGTGCGGATGTCGATGGACGTCAGGGAAGGTCGCG 158366 Query 4752 CCCTGAACCTGGGCCGCTACGGAGACAGCGAAGTCGTCCGGGGCGCTGACTTCCAGCGCG 4811 || || | ||||||||||| || ||||| || || | | || || | | || Sbjct 158365 AGCTCGACATCGGCCGCTACGGCGAGAGCGAGGTGGTGTCGCGGAAGGAGCTCGATCCCG 158306 Query 4812 ACTGGGTATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACA 4871 || | || | || |||||||| || ||||| ||| |||| | || ||||||| Sbjct 158305 ACCGCGTGATGGGCGCCGACCAGATCCTGGTCGGTCGCAACAACACGAGGCGCGCCTACA 158246 Query 4872 ACGCTCGCATCCGCGAG---CTGCGCGGGGCCGACCGAGCTTACCCTCTCAAGGGCGACA 4928 || || | || || | | | | |||| || || || || ||||||| Sbjct 158245 ACATGCGGGTGCGTCAGCGCCAGAACATCGAGGACC-AGTTT--CCAGTCGCCGGCGACA 158189 Query 4929 AGCTGGTCTGCCTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGG 4984 ||||||| ||||| |||||||| | | | ||||||| | |||||| ||| ||| Sbjct 158188 AGCTGGTGTGCCTGCGCAACAATCGCAAGAAGGGCCTGTTCAACGGCGGCCTGTGG 158133 >seq48397 Length=242080 Score = 105 bits (116), Expect = 2e-18 Identities = 195/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACGGACTGCGC--CTGCT 36770 ||||||| || |||||||| ||||||| || ||| | ||||| | |||| ||| | Sbjct 97616 TCGGCCCGGCCGGCACCGGCAAGACCTGGCTCGCCGTCGCCCACG--CCGCGCAGCTGTT 97673 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 ||| |||||| || | || || || | | || || || || || |||| ||| Sbjct 97674 CGAGCGCAAGGAGGTCGACCGTATCATCCTGTCGCGTCCGGCAGTGGAAGCCGGCGAGCG 97733 Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCT 36890 |||||||| ||||||||||| || |||||| | | || || ||| ||||| Sbjct 97734 GCTCGGCTTCCTGCCCGGCGATCTCCGCGAGAAGGTCGACCCCTATCTGCGGCCGATCTA 97793 Query 36891 GGACGCGGTGATCGACCTGGTTGGCCCGACGATGGCCAAGCGCCTGCAGGAGACCCGCCA 36950 || ||| || |||||| | | | || || | | |||| || ||||| || | Sbjct 97794 CGATGCGCTGTACGACCTCATGGACGCGCGTATCGTCGAGCGTGCGCTCCAGACCGGCGA 97853 Query 36951 GCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCA 36994 | |||||||||| ||||| |||| |||||| ||||| ||| ||| Sbjct 97854 GATCGAGATCGCGCCGCTCGCCTTCATGCGCGGCCGCACCCTCA 97897 >seq55600 Length=68428 Score = 87.8 bits (96), Expect = 6e-13 Identities = 239/361 (66%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 4517 AAGGCCAAGCTCCTGATCGTG---GACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAA 4573 ||||||||||| ||||||| ||||| | || ||||| || | | | |||| Sbjct 48347 AAGGCCAAGCT---GATCGTGATCGACGAATGCTCGATGGTGGATGCGGAGCTCGGCCGC 48291 Query 4574 GACCTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCG 4633 ||||| ||||||||| | || | || | |||||||| || || ||| |||||||| Sbjct 48290 GACCTGATGTCGTTCGATTGCCCGCTGCTGGTGCTGGGCGATCCGGCGCAGTTGCCGCCG 48231 Query 4634 GTGGCCGGGGCTGGATTCTTCACCAA-GCAGAAGGCCGACTTCC-TGCTGACCGACATCC 4691 | || | || || |||||| | || || |||| | | ||||||| || | | Sbjct 48230 ATTCAGGGCGGCGGCTTTTTCACCGATGCCGA--GCCGGATGCGATGCTGACGGAGGTTC 48173 Query 4692 ACCGCCAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGGTGGAA 4751 | || ||||| | ||| | || || | ||||||| || ||||| || | Sbjct 48172 ATCGTCAGGCACAGGACGATCCGATTGTGCGGATGTCGATGGCGGTGCGCGAAGGCCGCG 48113 Query 4752 CCCTGAACCTGGGCCGCTACGGAGACAGCGAAGTCGTCCGGGGCGCTGACTTCCAGCGCG 4811 | || | || ||| || ||| || ||||||||||| ||| ||| || || | | | Sbjct 48112 CGCTCGATCTCGGCACCTTCGGCGAAAGCGAAGTCGTGCGGCGCGATGCGCTCGATCCGG 48053 Query 4812 ACTGGGTATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACA 4871 || | || | ||| || ||| |||||||||| ||| |||| ||||| ||||||| Sbjct 48052 ACCGCGTGATGGCGGCGGATCAGGTTCTCGTCGGCCGCAACAACACGCGCCGCGCCTACA 47993 Query 4872 A 4872 | Sbjct 47992 A 47992 Score = 86.0 bits (94), Expect = 2e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5126 GACGAGTTCGACTACGGGTACGCCATGACAGTGCACAAATCCCAGGGTTCCCAGTGGGAT 5185 ||||||||||||||||| || | |||| ||||||||||||||||||||||||||| | Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 5186 GACGTGCTCGTCATCGACGAGTGGTTC 5212 ||||| | | |||||||| | ||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTC 47634 Score = 86.0 bits (94), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234 ||||| |||||||| ||||||||||| ||||||||||||||||| || || ||||| || Sbjct 48575 TTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATATCGCGGAC 48516 Query 4235 AACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAAG 4294 ||| |||| ||| ||||| || |||||||||||||| || || Sbjct 48515 GGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGCGCTGGTGATGCGC 48456 Query 4295 ACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTAC 4339 | |||||||||| ||| | |||||| || ||||| ||| Sbjct 48455 AACAAGGGCTGCGACAACGCTTCCACGATTCATTCACTGATTTAC 48411 >seq56171 Length=386068 Score = 80.6 bits (88), Expect = 1e-10 Identities = 146/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 36777 CAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGG 36836 ||||||| || | || || | | | ||||| ||||||||||||| || |||||| Sbjct 34423 CAAGGAAGTCGACCGCATCATTCTGTCGCGCCCTGCCGTCGAGGCCGGCGAACGGCTCGG 34482 Query 36837 CTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGACGC 36896 | ||||||||| | ||| |||||| | | || || ||| ||||| ||||| Sbjct 34483 ATTCCTGCCCGGTGACATGCGCGAGAAGGTCGACCCTTATTTGAGGCCGATCTACGACGC 34542 Query 36897 GGTGATCGACCTGGTTGGCCCGACGATGGCCAAGCGCCTGCAGGAGACCCGCCAGCTCGA 36956 | || ||||||| | | || || | | ||||| | | | | || || |||| Sbjct 34543 GCTGTACGACCTGATGGATTCGCGCATCGTCGAGCGCGGCTTGCAAAGCGGCGAGATCGA 34602 Query 36957 GATCGCCCCGCTGGCCTACATGCGAGGCCGAACC 36990 ||||| |||||||||| |||||| ||||| ||| Sbjct 34603 AATCGCGCCGCTGGCCTTCATGCGCGGCCGCACC 34636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180674977082196