Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq29743 125 1e-23 >seq29743 Length=27281 Score = 125 bits (138), Expect = 1e-23 Identities = 349/529 (66%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 161168 CCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCT 161227 || ||||||||||||||||| | || ||||| || || || || |||||||| || Sbjct 1867 CCCGATGAGATCTACAACCTCGCAGCGCAGAGCCACGTCGCCGTTTCGTTCGAGGAGCCA 1926 Query 161228 GAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTAT--TGGAGGCAGTTCGTC 161285 ||||| || || | | || ||||| || | || | |||| | ||||| | || Sbjct 1927 GAATACACGGCGAATTCCGACGCTCTCGGGA--CTTTGCGTATCCTAGAGGCCATGCGGA 1984 Query 161286 TCCTAGG-TATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGG 161344 || ||| | || || | || || |||| ||||| || || |||| ||||||| Sbjct 1985 TCACAGGCTTAGAGAG-GAAGGCACGCTTCTATCAGGCGTCGACATCTGAGCTGTATGGT 2043 Query 161345 TTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGC 161404 ||||| || |||| || || || || || |||||||| || || || || || || | Sbjct 2044 TTGGTCCAGGAGATCCCCCAAAAGGAGACGACACCTTTTTATCCGCGCTCACCGTACGCT 2103 Query 161405 GTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCAC 161464 || || || || |||| || ||||| ||||||| | || ||| | ||| | Sbjct 2104 GTCGCCAAGCTTTATGCCTACTGGATCACGGTGAACTACCGCGAAGCTTACGACATGTAT 2163 Query 161465 GCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACC 161524 ||| | | || ||||| || || || || || || ||||| || || ||||| || Sbjct 2164 GCCTGCAACGGCATTCTCTTTAATCACGAATCCCCGGTGCGGGGCGAAACCTTCGTGACG 2223 Query 161525 CGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTA 161584 || ||||| || | | | | ||||| | || || ||||| | || ||||| Sbjct 2224 CGAAAGATCACGCGTGCTTTGGCGCGTATCCATTTGGGCCTGCAGGAACGGCTTTACCTT 2283 Query 161585 GGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGG--AGGCTATGT 161642 || ||||| || | || |||||||| || || |||||||| | | || | | Sbjct 2284 GGCAATCTGGACGCCTTGCGCGATTGGGGGCACGCGCGTGACTATGTCGAAATGCAA--T 2341 Query 161643 GGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGG 161691 || ||||| | || ||||| | || || || | |||||||| || || Sbjct 2342 GGCTGATGCTGCAGCAGGACAAACCGGAAGATTTCGTGATTGCTACGGG 2390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729411879182960