Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq27440 100 4e-16 seq54491 89.7 6e-13 >seq27440 Length=426762 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 176493 GTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGC 176552 || || || | ||| |||||||||||||| || | || | ||||||||| |||| ||| Sbjct 329379 GTGAGCAGCGAGTAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACGTCGGCGGAGCGC 329320 Query 176553 TGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTGGAAACCGTAGTGACAC 176612 |||| | |||||||| || |||||| ||| ||||||||||| | | || ||| Sbjct 329319 TGATAGAGCTGACAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAACAGGCAATGGCAC 329260 Query 176613 GGCGGCAAAGCCATTAGATCGACCGCCCCGACATTCCAAGCCGAGACCAT 176662 ||||||| ||||| |||||| | | |||||| |||||||| || Sbjct 329259 GGCGGCAGCGCCATCTTGTCGACCTCGGCCGGATTCCACGCCGAGACGAT 329210 >seq54491 Length=272697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 176493 GTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAAGACGTCCACGGACCGC 176552 ||||| || || || || ||||||||||| || | || | || |||||| | || ||| Sbjct 166066 GTCAGCAGCGCATAGGACGCGATGTTGAACGGCACGCCGAGAAATACGTCCGCCGAACGC 166125 Query 176553 TGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTGGAAACCGTAGTGACAC 176612 || | | ||||||||| ||| ||||| ||||||||||||||| | |||||||| Sbjct 166126 TGGTACAGTTGGCAGGACAATTTTCCGTTAGCGACATAGAACTGGAACAGGCAGTGACAC 166185 Query 176613 GGCGGCAAAGCCAT 176626 || |||| ||||| Sbjct 166186 GGAGGCAGCGCCAT 166199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622473381821520