Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq47808 136 5e-27 seq47532 136 5e-27 seq38762 136 5e-27 seq38761 136 5e-27 >seq47808 Length=3094 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 449 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 508 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 509 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 567 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || |||||| | | || | ||| || | || | || | Sbjct 568 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 627 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 628 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 687 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | ||||| | ||| || || || || || || | || | Sbjct 688 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 747 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || ||||| || ||||| || || | || || | Sbjct 748 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 807 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | || ||| ||| || || || || | Sbjct 808 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 867 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 |||| || || |||| || || || || || | | || || | ||| | ||| | Sbjct 868 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 926 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| |||||||| || ||||| || || ||||| ||| Sbjct 927 CAGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCC 986 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 987 TTCTTGTACATCTCCCAGAT 1006 >seq47532 Length=3156 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 2708 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 2649 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 2648 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 2590 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || |||||| | | || | ||| || | || | || | Sbjct 2589 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 2530 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 2529 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 2470 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | ||||| | ||| || || || || || || | || | Sbjct 2469 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 2410 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || ||||| || ||||| || || | || || | Sbjct 2409 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 2350 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | || ||| ||| || || || || | Sbjct 2349 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 2290 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 |||| || || |||| || || || || || | | || || | ||| | ||| | Sbjct 2289 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 2231 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| |||||||| || ||||| || || ||||| ||| Sbjct 2230 CAGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCC 2171 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 2170 TTCTTGTACATCTCCCAGAT 2151 >seq38762 Length=2104 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 1280 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1339 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 1340 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1398 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || |||||| | | || | ||| || | || | || | Sbjct 1399 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 1458 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 1459 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1518 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | ||||| | ||| || || || || || || | || | Sbjct 1519 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1578 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || ||||| || ||||| || || | || || | Sbjct 1579 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1638 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | || ||| ||| || || || || | Sbjct 1639 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 1698 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 |||| || || |||| || || || || || | | || || | ||| | ||| | Sbjct 1699 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 1757 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| |||||||| || ||||| || || ||||| ||| Sbjct 1758 CAGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCC 1817 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 1818 TTCTTGTACATCTCCCAGAT 1837 >seq38761 Length=2091 Score = 136 bits (150), Expect = 5e-27 Identities = 370/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || || | |||||| || | ||| Sbjct 1267 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGCTGATCATCTCGTTACTGAAGGCGAG 1326 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| ||| | || || |||| Sbjct 1327 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGCTGCCGGAGAAGA 1385 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG----TATCAT 39788 ||||||| || || || |||||| | | || | ||| || | || | || | Sbjct 1386 AGATGCCCTCGACGGCGGCAAATCCGATGAGGCGCTCGGCGAAGGTCTCGACGCCCTCCT 1445 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||||||| ||||| || || |||||||| || | |||| || || || | Sbjct 1446 TGTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGG 1505 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 | ||||| | ||||| | ||| || || || || || || | || | Sbjct 1506 CGCGGAAGAGGCGGTCCTTTTCGACCGAATCCTTGACGTAGGTGTCGATGAGGAGCGAGT 1565 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||| || || || ||||| || ||||| || || | || || | Sbjct 1566 ACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1625 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || | | || | || ||| ||| || || || || | Sbjct 1626 GCACCTGCACCTCCTTCATGAAGCGGCCGGCGAGGTTCTCAGCCACGATACCGTCGCTGG 1685 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-C 40087 |||| || || |||| || || || || || | | || || | ||| | ||| | Sbjct 1686 CGGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGATTCC 1744 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| || || || | ||| |||||||| || ||||| || || ||||| ||| Sbjct 1745 CAGTGCTTCATGTCGGAACTCAGATCGACTTCTTCGGCAGTCCAGAAGGAAGCCTCGGCC 1804 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 1805 TTCTTGTACATCTCCCAGAT 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686421592760880