Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq36931 280 4e-71 seq48397 84.2 7e-12 >seq36931 Length=650932 Score = 280 bits (310), Expect = 4e-71 Identities = 299/392 (76%), Gaps = 2/392 (1%) Strand=Plus/Minus Query 31902 CCGCATCCGCTCGGGTCGTTTGGTCAGCACCTGGAATGTGTGCTGCGGCGCCAGCGCCAT 31961 |||||||| | | || || ||||||||||| || || |||||||| ||||||||||| Sbjct 421530 CCGCATCCTTGCTGCACGCTTCGTCAGCACCTGAAACGTATGCTGCGGTGCCAGCGCCAT 421471 Query 31962 CACAGCGAAAACCTTGTCGAGCATCTCGTCGGTCACGCCCTCGGCGAACAGGTCGCCATG 32021 ||| ||||| || ||||| | |||| | |||| ||| ||| || |||||||| Sbjct 421470 CACCGCGAAGACGCGGTCGATCCAGGCGTCTGGCACGTTCTCATGGAAGAGATCGCCATG 421411 Query 32022 GGCGCAGACGAAAACCATGCGCGGCCGCTTCCAGCGCAGCGGCTGGTCGAGCCACTGGTC 32081 |||||||||||| |||||||||||| ||||||| |||||||||| | |||||| || Sbjct 421410 GGCGCAGACGAACACCATGCGCGGCTTCTTCCAGGACAGCGGCTGGGTCAACCACTGATC 421351 Query 32082 ATTGAACCGGACTTCGCCAGTCCAGACCGGGCCAGCTTTGCTGTCGCGCGTTAGGCCGGA 32141 ||||| || || ||||| ||||||||||| || || ||||| || || || |||| Sbjct 421350 GTTGAAGCGCACCTCGCCGGTCCAGACCGGACCGGCCTTGCTATCCTTGGTCAGACCGGC 421291 Query 32142 GCGGGACGGGATGCCGC-GCAGCCGGGTGCCTGCTAGGCGCATGGCGTAGCAGTTCGTAC 32200 ||| || |||||| | ||||||| ||||| || || ||| ||||||||||| || | Sbjct 421290 GCGCGA-GGGATGGTTCCGCAGCCGCGTGCCGGCGAGCTTCATCGCGTAGCAGTTGGTGC 421232 Query 32201 ATCCGGGCGAGACCACAGAGCAGCCGGTGATGATGTTCCAGGTCGCGTCGGTCCACTCGA 32260 | || ||||||| ||| |||||||| |||||| ||||| ||||| || ||||| |||| Sbjct 421231 AGCCCGGCGAGAGCACCGAGCAGCCCGTGATGGGATTCCATGTCGCATCCGTCCATTCGA 421172 Query 32261 TCTTGCTGTTATCGGCCATCCTTAGACCTCCG 32292 ||||| || || |||||| | || ||||| Sbjct 421171 TCTTGGACTTGTCCGCCATCATCCGATCTCCG 421140 >seq48397 Length=242080 Score = 84.2 bits (92), Expect = 7e-12 Identities = 135/190 (71%), Gaps = 17/190 (9%) Strand=Plus/Minus Query 33506 GCTGACCATCTTGCGCGGCACGATGATGCCGGCGAAA---TCGG-GCAGGTTGTCTCGGG 33561 || ||| |||||||||||||||| | ||||| | |||| || | | || | Sbjct 60810 GCCGACGGTCTTGCGCGGCACGATCACGCCGGGCATGCCCTCGGCGCCCTTGGGCT-GCA 60752 Query 33562 CCATGGCCAGCCGGGACAGGCGGTGGCCGTCGGTTGCTACGGCGACGAGGGC----GCCT 33617 ||| | | ||| ||| |||||||| || ||||| || ||| || |||| |||| Sbjct 60751 CCAGGTCGAGCTGGGCGAGGCGGTGACCATCGGTCGCGACGCCGCGCAGGGTTGCGGCCT 60692 Query 33618 T---CGTGCGGG-----TGCAGGTAGATGCCATTGAGGTAGTAGCGGGTTTCCTCGCTGG 33669 | ||||| || ||||| |||||||| |||||||||||||| || |||||| | | Sbjct 60691 TGGGCGTGCCGGCGGCGTGCAGATAGATGCCGTTGAGGTAGTAGCGCGTCTCCTCGGTCG 60632 Query 33670 AGATCGCGAA 33679 |||||||||| Sbjct 60631 AGATCGCGAA 60622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152735415766648