Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq27440 102 4e-17 >seq27440 Length=426762 Score = 102 bits (112), Expect = 4e-17 Identities = 159/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 21588 CATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTG 21647 |||||||||||| ||||| | | | |||||| ||||||||| ||||||| ||||| Sbjct 329059 CATCTGGGACGAGTGGGCGGATGCCAATGGCGATCTCGGCCCGGTCTATGGCCATCAGTG 329118 Query 21648 GCGCAGCATCCAAGGCCCCG-ATGGAAAGAACATCGACCAGCTGGCCAAGGCACAAGAGC 21706 |||| ||| ||||||| | || | |||||||||| | ||||| | || Sbjct 329119 GCGCT-CATGGCCGGCCCCGGACGGCCGCAGCATCGACCAGATCGCCAACGTCGTGGACA 329177 Query 21707 TGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGC 21766 || | | | | |||||| |||||| | ||||| || ||||| ||||||| Sbjct 329178 TGATCAAGCGCAATCCGGACTCGCGCCGCCTGATCGTCTCGGCGTGGAATCCGGCCGAGG 329237 Query 21767 TCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811 ||||| ||||||| ||| | ||||||||| |||||||||||| Sbjct 329238 TCGACAAGATGGCGCTGCCGCCGTGCCATTGCCTGTTCCAGTTCT 329282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236479551021962