Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq47808 136 1e-26 seq47532 136 1e-26 seq38762 136 1e-26 seq38761 136 1e-26 seq42602 95.1 4e-14 seq38368 95.1 4e-14 seq38367 95.1 4e-14 seq30353 95.1 4e-14 >seq47808 Length=3094 Score = 136 bits (150), Expect = 1e-26 Identities = 321/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||||||||| | |||||| || Sbjct 898 TTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGTATCGTGGCTGAGAACCTC 839 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| ||| Sbjct 838 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTC 782 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 || ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 781 CAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTACGT 723 Query 443592 CCGAACGAA---GACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 | || || | |||| || | ||||| | || |||| ||| || Sbjct 722 C--AAGGATTCGGTCGAAAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 665 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 664 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGC 606 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || ||| ||||| | ||||| || | || || ||||||||| || | Sbjct 605 CGAGCGCCTCATCGGATTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 547 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 546 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 487 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || |||||||| | || |||||||||||||| || |||||||||| Sbjct 486 TCAGCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 436 >seq47532 Length=3156 Score = 136 bits (150), Expect = 1e-26 Identities = 321/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||||||||| | |||||| || Sbjct 2259 TTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGTATCGTGGCTGAGAACCTC 2318 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| ||| Sbjct 2319 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTC 2375 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 || ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 2376 CAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTACGT 2434 Query 443592 CCGAACGAA---GACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 | || || | |||| || | ||||| | || |||| ||| || Sbjct 2435 C--AAGGATTCGGTCGAAAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 2492 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 2493 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGC 2551 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || ||| ||||| | ||||| || | || || ||||||||| || | Sbjct 2552 CGAGCGCCTCATCGGATTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 2610 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 2611 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 2670 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || |||||||| | || |||||||||||||| || |||||||||| Sbjct 2671 TCAGCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 2721 >seq38762 Length=2104 Score = 136 bits (150), Expect = 1e-26 Identities = 321/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||||||||| | |||||| || Sbjct 1729 TTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGTATCGTGGCTGAGAACCTC 1670 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| ||| Sbjct 1669 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTC 1613 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 || ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 1612 CAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTACGT 1554 Query 443592 CCGAACGAA---GACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 | || || | |||| || | ||||| | || |||| ||| || Sbjct 1553 C--AAGGATTCGGTCGAAAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 1496 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 1495 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGC 1437 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || ||| ||||| | ||||| || | || || ||||||||| || | Sbjct 1436 CGAGCGCCTCATCGGATTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 1378 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 1377 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 1318 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || |||||||| | || |||||||||||||| || |||||||||| Sbjct 1317 TCAGCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1267 >seq38761 Length=2091 Score = 136 bits (150), Expect = 1e-26 Identities = 321/471 (68%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 443415 TTCTTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGTGAGAATCTG 443474 ||| |||| | || |||||||||| || | |||||||||||||| | |||||| || Sbjct 1716 TTCATCAAGCACGTCCTGGCCTTCTTCGCCGCCAGCGACGGTATCGTGGCTGAGAACCTC 1657 Query 443475 GTGACGCGTTTCTACGAAAT-GGT--AGTGTACACCGAGGCCCGCTACTTCTACGCGTTC 443531 | || ||| | ||| ||| || || | ||||||| |||| |||||||| ||| Sbjct 1656 GCCGGCCGCTTC-ATGAAGGAGGTGCAG-GTGC-CCGAGGCGCGCTGCTTCTACGGCTTC 1600 Query 443532 CAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGACACTAATT 443591 || ||| || |||||||| ||| ||||| | ||| | | ||| | || ||| | Sbjct 1599 CAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTCCTCATCGACAC-CTACGT 1541 Query 443592 CCGAACGAA---GACGAACAGCGGTCCATCTTCTCATCGTTCATGACCACGCCAGGCATC 443648 | || || | |||| || | ||||| | || |||| ||| || Sbjct 1540 C--AAGGATTCGGTCGAAAAGGACCGCCTCTTCCGCGCCATCGAGACCGTGCCCTCGGTC 1483 Query 443649 ACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATC-TC---AGCTTCGT 443704 | | ||| | |||||| | ||||| || ||| || | | || | ||||| Sbjct 1482 AAGAAGAAGGCCGACTGGGCGATGAAGTGGATC-AACAAGGAGGGCGTCGAGACCTTCGC 1424 Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| || ||| ||||| | ||||| || | || || ||||||||| || | Sbjct 1423 CGAGCGCCTCATCGGATTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCAGCTTCTGC-T 1365 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| | || ||||| || || |||| ||| || |||| |||||||| ||| Sbjct 1364 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCGCCTTCAGTAACGAGATGA 1305 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || |||||||| | || |||||||||||||| || |||||||||| Sbjct 1304 TCAGCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACACCA 1254 >seq42602 Length=5458 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 3997 AGCACGGCCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 3938 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | |||||||| | | Sbjct 3937 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCATCC 3878 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 3877 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 3846 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 3596 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 3537 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 3536 GCCGCCAACGCGATCCAGTTCACCGT 3511 >seq38368 Length=5470 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 1462 AGCACGGCCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 1521 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | |||||||| | | Sbjct 1522 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCATCC 1581 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 1582 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 1613 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 1863 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 1922 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 1923 GCCGCCAACGCGATCCAGTTCACCGT 1948 >seq38367 Length=4245 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 1595 AGCACGGCCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 1536 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | |||||||| | | Sbjct 1535 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCATCC 1476 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 1475 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 1444 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 1194 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 1135 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 1134 GCCGCCAACGCGATCCAGTTCACCGT 1109 >seq30353 Length=5073 Score = 95.1 bits (104), Expect = 4e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | ||||||||||||| || ||| ||| | || | Sbjct 3479 AGCACGGCCTGCGCAACTCGCTCCTCGTGGCGCCCATGCCCACGGCCTCGACCTCGCAGA 3538 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| ||| || || | || ||| || |||||| ||| | |||||||| | | Sbjct 3539 TCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCATCC 3598 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTAC 256285 | ||||||| ||| |||| || ||| || || Sbjct 3599 TCGCCGGCGACTTCACCGTCGTCAACGAGCAC 3630 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||| |||||||||||||| |||||||| || Sbjct 3880 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTTCGCACCCGGCCC 3939 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| || ||||||| |||||||| Sbjct 3940 GCCGCCAACGCGATCCAGTTCACCGT 3965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587181268808190