Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq46263 140 1e-27 seq55950 109 2e-18 seq54362 107 6e-18 seq55903 98.7 3e-15 seq45692 93.3 1e-13 seq47552 91.5 4e-13 seq51098 87.8 5e-12 seq51097 87.8 5e-12 seq37185 87.8 5e-12 >seq46263 Length=68285 Score = 140 bits (154), Expect = 1e-27 Identities = 233/330 (71%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| |||| ||||| || ||||| ||||| | || || | || ||||||||| Sbjct 44158 AAGATGAAAGAAACGGCTGAGGCTTATTTGGGTGAGCCCGTTACGCAAGCAGTTATTACT 44217 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGC-TGGCAGCATTGC 349680 || || || || |||||||| | || ||| |||||||| ||||| ||||| ||||| Sbjct 44218 GTTCCTGCTTACTTTAATGACTCTCAACGTCAGGCAACAAAGGATGCGGGGCAG-ATTGC 44276 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || || | || || | || ||||| || || || || || || | || |||||||| Sbjct 44277 AGGTCTAGAAGTATTACGTATTATTAACGAGCCAACAGCAGCTGCTCTGGCTTATGGGCT 44336 Query 349741 TGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 ||| |||| || | | | | ||| | ||| || | ||||||||||| || Sbjct 44337 TGAGAAAA--AGGAATCCGG----TACCATTGTGGTTTACGACCTGGGTGGTGGTACGTT 44390 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||| || || | || | ||| ||| || |||||||||||||| |||| |||||| Sbjct 44391 TGACGTTTCTGTCCTTGAAATTGGAGATGGTGTTTTTGAAGTTAAATCAACCAATGGTGA 44450 Query 349861 TACACATCTT-GGTGGAGAAGATTTTGATA 349889 ||| | |||| || || |||||||| |||| Sbjct 44451 TAC-CTTCTTAGGCGGTGAAGATTTCGATA 44479 >seq55950 Length=6881 Score = 109 bits (120), Expect = 2e-18 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || || || || || ||||| || || || || | Sbjct 915 TTTGCATACCGCCACGAAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 974 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || ||||| || || ||||| ||||| ||||| ||||||| Sbjct 975 AGTCGGCCAGCGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGAT 1034 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||| || || || || || ||||| || ||| || || || || ||||| | || | | Sbjct 1035 CAGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCAATGGTGTC-GCT 1092 Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || |||| ||||| ||||| || || || || || || |||||| Sbjct 1093 GGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATT 1150 >seq54362 Length=8978 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || ||||| | || || ||||||||||| || ||||| || || || || ||||||| Sbjct 4332 CCGCCACGCAGTCGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 4391 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||| ||||| || || ||||| || ||||| Sbjct 4392 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 4451 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || || || |||| || | || || Sbjct 4452 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTCGACTCGACC 4511 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| |||||| || || || || || || || |||||||| Sbjct 4512 TCGAGAGTAATTGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 4558 >seq55903 Length=2024 Score = 98.7 bits (108), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || ||||| || || || Sbjct 917 CATACCGCCACGAAGACGGAGCACGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTC 976 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| ||||| || || ||||||||||| Sbjct 977 GGCCAGCGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCAGG 1036 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || ||| || || || || || || | || | | Sbjct 1037 GGGAATGCCCTCCTTGTCCTGGATCTTTTGC-TTGACGTTCTCGATGGTGTCGCTCGACT 1095 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || |||| ||||| ||||| || || || || || || |||||| Sbjct 1096 CGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATTTGCATT 1148 >seq45692 Length=9336 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || |||||||| || |||| | || || || || Sbjct 4880 AGGACGAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCAGCCAGCGTACGGCCGTCC 4939 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| ||||| ||||||||||| || || || || || ||| Sbjct 4940 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 4999 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || || | || | ||| || || || || || | || Sbjct 5000 TGGATCTTCTGCTTGACGTTCTCGATGGTGTC-GCTGGACTCGACCTCGAGGGTGATGGT 5058 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || || || || |||||||| Sbjct 5059 CTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 5091 >seq47552 Length=2045 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 1592 CATACCACCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1533 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| ||||| ||||||||||| Sbjct 1532 GGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGG 1473 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 || || || || || ||||| || || || || || || || | || | ||| | Sbjct 1472 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATAGTGTC-GCTGGACT 1414 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || || || || ||||| Sbjct 1413 CGACCTCGAGGGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 1362 >seq51098 Length=3752 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2302 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 2361 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 | ||||||||||||||||||||| ||| || Sbjct 2362 CGCGTGGGTTCAAACCCCACTCCAGGCAATT 2392 >seq51097 Length=2938 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/91 (82%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGG----CGAAAGC 423819 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| || | Sbjct 2236 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGTTCGCGCAC 2295 Query 423820 CTCGTGGGTTCAAACCCCACTCCGTGCATTT 423850 | ||||||||||||||||||||| ||| || Sbjct 2296 CGCGTGGGTTCAAACCCCACTCCAGGCAATT 2326 >seq37185 Length=1471 Score = 87.8 bits (96), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | ||||| || || || || ||||| || || || || || || Sbjct 300 CATACCGCCACGGAGACGAAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 241 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || || || ||||| || || ||||| || || Sbjct 240 GGCCAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATRAGRCGCTGCTGGTCRGG 181 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-T 140685 ||| || || || || || || || || || || || || || | || | ||| | Sbjct 180 AGGRATGCCCTCCTTGTCYTGGATCTTCTGCTTGACGTTCTCGATSGTGTC-GCTGGACT 122 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | ||||| ||||| || || || || || |||||||| Sbjct 121 CGACCTCGAGGGTGATCGTCTTACCGGTCAGGGTCTTGACGAAGATCTGCAT 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514152799633826