Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq27440 96.9 3e-15 seq56113 82.4 6e-11 seq27656 82.4 6e-11 >seq27440 Length=426762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 179/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 29921 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29980 || || || || || || | || |||||||| || |||| ||| ||||| || ||| Sbjct 329427 TGCACGAAATCGCCGGGCTTCAGACCGGTGACCTGCGCCACCATCATGGTGAGCAGCGAG 329368 Query 29981 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 30040 ||| ||||||||| ||||| || ||||| | ||| | || | ||| ||||||||| Sbjct 329367 TAGGAGGCGATGTTGAAGGGCACGCCGAGGAAGACGTCGGCGGAGCGCTGATAGAGCTGA 329308 Query 30041 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCC 30100 || || |||| |||| | ||||| ||||| ||| | |||||||| || || ||| Sbjct 329307 CAGGACAGCTTGCCGTTGGCGACGTAGAACTGGAACAGGCAATGGCACGGCGGCAGCGCC 329248 Query 30101 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 30160 || | | | || || ||||| || | ||||| | ||| | || || ||| Sbjct 329247 ATCTTGTCGACCTCGGCCGGATTCCACGCCGAGACGATCAGGCGGCGCGAGTCCGGATTG 329188 Query 30161 TTCCTGATGAGGTCCACGGCGTT 30183 | |||| | ||||||| |||| Sbjct 329187 CGCTTGATCATGTCCACGACGTT 329165 >seq56113 Length=2093 Score = 82.4 bits (90), Expect = 6e-11 Identities = 130/181 (72%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 52731 GTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT-T 52789 ||| |||||||| ||||| | ||| || |||| ||||||||||| ||| | Sbjct 1217 GTCCAGGTGAGGGTGAGGTCGGTGAGGACGCCCCAGATCGGCGACAAGTTCAGTTCGCGT 1276 Query 52790 CACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTG-ACC--CAGGAGGACATGCCCTTCGA 52846 |||||| || ||||| ||| || | || || ||| ||||||||||||||||| | Sbjct 1277 CACGGC-CAGAAGGGTACGGTGGG---CATCATGTACCGGCAGGAGGACATGCCCTTTAA 1332 Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 || || || | |||||| ||||| ||||||| |||||| ||||||| | ||||| Sbjct 1333 CATCGAGGGCATCACCCCCGACATCATCGTCAACCCGCACGCCATTCCCTCGCGTATGAC 1392 Query 52907 C 52907 | Sbjct 1393 C 1393 >seq27656 Length=1108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 52759 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACGTG-CGGAG 52815 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | | || | || Sbjct 821 ACCCGGTGATCGGAGACAAGTTCGCGTCGAGGCACGG-GCAGAAGGGCGTCATGTCCCAG 879 Query 52816 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCA 52875 | || | | |||||| ||||||||||| | || || || ||||||| |||||| Sbjct 880 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 937 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 52907 ||||||| |||||||| ||||| | |||||| Sbjct 938 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406029418836264