Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq24082 127 8e-25 seq55600 95.1 5e-15 >seq24082 Length=208990 Score = 127 bits (140), Expect = 8e-25 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393 |||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||| Sbjct 158828 TTCCGCCTGTTCGGCTTTGCCGGCACCGGCAAGACCACGCTGGCGCGGCACATCGCCGAG 158769 Query 32394 GGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAAG 32453 ||| |||| ||| || ||||||||| ||||| |||||||| |||| || Sbjct 158768 GGCGTCGATGGCGAGGTGAAGTTCGCCGCCTTCACCGGCAAGGCCGCACTCGTCATGCGC 158709 Query 32454 ACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTAC 32498 | ||||| ||| || | |||||||||| |||||||||| Sbjct 158708 AACAAGGGTTGCGACGACGCGTCCACCATCCACTCGCTGATCTAC 158664 Score = 116 bits (128), Expect = 1e-21 Identities = 242/358 (68%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | || | ||||| | ||| ||||| || | | |||| ||| Sbjct 158600 AAGGCCAAGCTGATCGTCATCGACGAATGCTCGATGGTCGATGCCGAATTGGGGCGCGAC 158541 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || |||| |||| || || | | |||||||| ||||| ||||||||||| || Sbjct 158540 TTGATGTCGTTCGACTGCCCTCTCTTGGTGCTGGGCGATCCCGCGCAGCTGCCGCCGATC 158481 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 ||| | ||| ||||||||||| | || | || | |||||||| | || || Sbjct 158480 CAGGGCGGCGGCTTCTTCACCAATTCGGAGCCGGATGCGATGCTGACCGAGGTGCATCGT 158421 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCTG 32918 ||||||| ||| | |||||| | |||||| |||| | ||||| | | || Sbjct 158420 CAGGCCCAGGACGATCCGATCGTGCGGATGTCGATGGACGTCAGGGAAGGTCGCGAGCTC 158361 Query 32919 TCCCTGGGTCGCTACGGGGAGAGCGAGGTGGTG-CGCATGGCTGACTTCCAGCGCGACTG 32977 | | || |||||||| ||||||||||||||| ||| | || || | | |||| | Sbjct 158360 GACATCGGCCGCTACGGCGAGAGCGAGGTGGTGTCGC-GGAAGGAGCTCGATCCCGACCG 158302 Query 32978 GGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAAC 33035 ||| | |||||||||||||||||||| ||| |||| | || ||||||||| Sbjct 158301 CGTGATGGGCGCCGACCAGATCCTGGTCGGTCGCAACAACACGAGGCGCGCCTACAAC 158244 Score = 96.9 bits (106), Expect = 1e-15 Identities = 123/163 (75%), Gaps = 16/163 (10%) Strand=Plus/Minus Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347 ||||||||||| |||||||||| ||||||||||||||| |||||||| || |||||| Sbjct 157970 GACGAGTTCGATTACGGCTACGTGCTGACCGTGCACAAGTCGCAGGGCTCGCAATGGGAC 157911 Query 33348 GA---CGTGCTCGTCATCGACGAGTG------GTTCC-GGA-ACGATCGCCAGCAGTGGC 33396 || |||||| || |||||||| | ||||| ||| | | || || ||||| Sbjct 157910 GATGTCGTGCT-GT--TCGACGAGAGCTTTGCGTTCCAGGAGTCCAGGGCAAG--GTGGC 157856 Query 33397 TCTATACCGCGCTGACCCGCGCCGCGAAGAAGGTGCGCGTTGT 33439 ||||||||| | || |||||||||||| | || |||| || Sbjct 157855 TCTATACCGGCATCACGCGCGCCGCGAAGCGGCTGAGCGTGGT 157813 >seq55600 Length=68428 Score = 95.1 bits (104), Expect = 5e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393 ||||| ||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| || Sbjct 48575 TTCCGGCTGTTCGGCTATGCCGGCACCGGCAAGACCACCCTGGCGCGGCATATCGCGGAC 48516 Query 32394 GGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGC 32440 ||| || |||||| ||| ||||| || ||||| |||||||| Sbjct 48515 GGCGTCAACGGCAACGTGAAATTCGCAGCGTTCACCGGCAAGGCCGC 48469 Score = 93.3 bits (102), Expect = 2e-14 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 33288 GACGAGTTCGACTACGGCTACGCCCTGACCGTGCACAAGAGCCAGGGCTCCCAGTGGGAC 33347 |||||||||||||||||||| | |||||||||||||| |||||| ||||||||| || Sbjct 47720 GACGAGTTCGACTACGGCTATGTGCTGACCGTGCACAAATCCCAGGGTTCCCAGTGGAAC 47661 Query 33348 GACGTGCTCGTCATCGACGAGTG------GTTCCGGAACGATCGCCAGCAGTGGCTCTAT 33401 ||||| | | |||||||| | |||| | || ||| | |||||||| Sbjct 47660 GACGTCGTGCTGTTCGACGAGAGCTTCGCCTTCCAGGACAGCCGCGCCCGCTGGCTCTAC 47601 Query 33402 ACCGCGCTGACCCGCGCCGCGAA 33424 |||| | |||||||||||||| Sbjct 47600 ACCGGCATTACCCGCGCCGCGAA 47578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191358973231360