Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq54303 311 4e-80 seq55957 306 2e-78 >seq54303 Length=793959 Score = 311 bits (344), Expect = 4e-80 Identities = 533/763 (70%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 64065 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TACCCGAGGGGCCGG 64123 || ||||||| ||| || || ||| || |||||||| || | ||| |||||| | Sbjct 1494 CCTCCGGCTCCCTCGGGCTTGATATCGCGCTCGGCATCGGCGGCCTGCCCAAGGGGC-GT 1552 Query 64124 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 64183 || || || |||||||| || ||||| || || ||| | || ||| || || ||||| Sbjct 1553 GTCGTCGAGATCTACGGGCCGGAATCGTCGGGCAAGACGACGCTGGCGCTGCATACGGTG 1612 Query 64184 GCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGAC 64243 || | ||||||||| || |||| ||||| |||||||| |||||| | || ||| Sbjct 1613 GCGGAGGCGCAGAAGAAGGGCGGCATTTGCGCCTTTATCGACGCCGAGCACGCGCTCGAC 1672 Query 64244 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGAC 64303 || | || ||| ||| || || || ||||| | || || | ||||| ||| Sbjct 1673 CCGGTCTATGCCCGCAAGCTGGGCGTCAACATCGACGAGCTGCTGATCTCGCAGCCCGAC 1732 Query 64304 ACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTC--CA 64361 || ||||||||||| ||||||||| ||| | | || || | | || ||| | Sbjct 1733 ACCGGCGAGCAGGCGCTGGAGATCTGCGACACCTTGGTGCGCTCCG--GTGCCGTCGACG 1790 Query 64362 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 64421 | |||| || || || || ||||| ||||||||| ||||||||||| ||||| || | Sbjct 1791 TTCTCGTGGTCGATTCGGTCGCGGCGCTGGTGCCGAAGGCCGAGCTCGAGGGCGAGATGG 1850 Query 64422 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 64481 | ||| | |||||||| || ||| | ||| ||||| | ||||||||||| | Sbjct 1851 GCGACGCGCTGCCGGGCCTGCAGGCCCGCTTGATGAGCCAGGCGCTACGCAAGCTCACGG 1910 Query 64482 GCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCG 64541 | ||||| || |||||||| || | ||| |||||||| | ||| |||||||| Sbjct 1911 CCTCCATCAACAAGTCCAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCG 1970 Query 64542 GCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACG 64601 | |||| |||||| || || || ||||| |||||||| || ||| ||||||| Sbjct 1971 G---CGTGATGTACGGCTCGCCTGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACG 2027 Query 64602 CCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCG 64661 ||||||||||| | || |||| ||||||| | | ||||| | || |||| |||| Sbjct 2028 CCTCAGTCCGCCTCGACATCCGCCGCATCGGCGCGATCAAGGAGCGTGACGAGGTGGTCG 2087 Query 64662 GCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGC-- 64719 ||||| ||| || || ||||| || ||||||||||||| |||||| | ||| || Sbjct 2088 GCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGG---CGCCGCCCTTCAA-GCAG 2143 Query 64720 --CGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAACTCCTCGACCT 64776 ||||||| | || ||||||| |||||| |||| | || || || ||||||| || Sbjct 2144 ATCGAGTTCGACATCATGTACGGCGAGGGCGTCTC-CAAGATGGGTGAGATCCTCGATCT 2202 Query 64777 GGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 64819 | ||| | ||| | || ||||||| |||||||||||| Sbjct 2203 CGGCGTCAAGGCCGGCATCGTCGAGAAGTCCGGCGCCTGGTTC 2245 >seq55957 Length=247269 Score = 306 bits (338), Expect = 2e-78 Identities = 528/762 (69%), Gaps = 9/762 (1%) Strand=Plus/Plus Query 64061 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 64120 ||| || | ||||| | | |||||| ||| ||||||||||| || | || | ||| Sbjct 173989 ATTTCCTCGGGCTCGCTGGGGCTGGACATCGCGCTGGGCATCGGTGGCTTGCCCAAGGGG 174048 Query 64121 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64180 |||||| | || || ||||| || ||||| || || ||| |||| ||| || ||| Sbjct 174049 CGGGTGATCGAGATTTACGGGCCGGAATCCTCCGGCAAGACAACGCTGGCGCTGCACTGC 174108 Query 64181 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 64240 ||||| | || |||||| || |||| | ||||| |||||| || || ||| | || Sbjct 174109 GTGGCTGAGGCCCAGAAGAAGGGCGGCATCTGCGCCTTCATCGATGCCGAACACGCGCTC 174168 Query 64241 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 64300 ||||| | || ||| |||||| || | |||| | || || | ||||| Sbjct 174169 GACCCGGTCTATGCCCGCAAGCTCGGCGTCAATGTCGATGAACTTCTGATTTCGCAGCCC 174228 Query 64301 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 64360 ||| ||||||||||| ||||| |||| ||| || || || |||| | ||| Sbjct 174229 GACCACGGCGAGCAGGCGCTGGAAATCGCCGACACGCTGGTGCGTTCCGGCGCG--GTCG 174286 Query 64361 ATCGTCG--TCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 64418 || | |||| ||||| ||||| || || |||||||||||||| ||||||||||| | Sbjct 174287 ATGTGCTGATCGTGGACTCGGTGGCAGCACTCGTGCCGCGCGCCGAACTCGAAGGCGAGA 174346 Query 64419 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 64478 | || || || | || ||||| ||||| || ||| ||||| |||||||||| | Sbjct 174347 TGGGCGATAGCCTTCCGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTGA 174406 Query 64479 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 64538 ||| | ||| || || |||| || | ||| |||||||| | ||| ||||| Sbjct 174407 CCGCTTCGATCAACAAGTCCCACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGA 174466 Query 64539 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 64598 |||| ||| |||||| || || |||||||| |||||||| || ||| ||||| Sbjct 174467 TCGGT---GTGATGTACGGCTCGCCGGAAACCACCACCGGCGGCAATGCGCTGAAGTTCT 174523 Query 64599 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAG-AAGGAAGGCGATGAGGCT 64657 |||| || || ||| | || |||| ||||||| | | || ||||| |||| || | Sbjct 174524 ACGCGTCCGTGCGCCTCGACATCCGCCGCATCGGC-CAGATCAAGGAGCGCGACGAAGTC 174582 Query 64658 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAAC 64717 ||||||||| ||||| || ||||| || |||||||||||||| |||||| | | Sbjct 174583 GTCGGCAACTCGACCCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCAG 174642 Query 64718 GCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTG 64777 | ||| ||| | || ||||||| |||||| ||||| || |||| | ||||| || Sbjct 174643 GTCGAATTCGACATCATGTACGGCGAGGGCGTCTCGAAGATGGGCGAAATTCTCGATCTC 174702 Query 64778 GCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 64819 | ||| | ||| | || ||||||| |||||||||||| Sbjct 174703 GGCGTCAAGGCCGGCATTGTCGAGAAGTCCGGCGCCTGGTTC 174744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232642206547562