Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20palestinensis_20[genbank_20GCA_5F000826325.1_202015- 01-07] 56,742 sequences; 103,482,825 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq32030 165 3e-36 seq34751 134 4e-27 >seq32030 Length=166927 Score = 165 bits (182), Expect = 3e-36 Identities = 297/428 (69%), Gaps = 12/428 (3%) Strand=Plus/Minus Query 40009 CTTGGTCAGCTTCTCGCCGACCTGGA---AGGGCTTGTCCAGCACGCGGGCCGCGTCCTT 40065 ||| || ||||| ||| |||||| ||||| | | || |||||| | |||| Sbjct 86194 CTTCGTGAGCTTGTCG---ACCTGGCCATAGGGCATCTGGAGGACGCGGCCGACGTCGCG 86138 Query 40066 CATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCC 40125 || | | |||||||| | | |||||||| |||||| ||||||| |||| || Sbjct 86137 CAGCACCCCGCGCGCCTGCAGCGTACCGAAGGTGATGATCTGCGCGACCTGGTCGCGGCC 86078 Query 40126 GTACTTCTCGGTG-ACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCGAT 40182 ||| || | || ||||| | ||| ||||||||||| || || | || ||| ||||| Sbjct 86077 GTAGCGCT-GCTGCACGTAACTGATCACCTCGCCGCGGCGATCCTGGCA--GAAATCGAT 86021 Query 40183 GTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTG 40242 ||| | ||| ||||| || ||||| ||||| || ||||| |||||||| | || ||| Sbjct 86020 GTCGAAGTCCGGCATCGAGACGCGTTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAA 85961 Query 40243 CTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGA 40302 || | ||||||||||||||||| || | ||||||||||| ||||| | || Sbjct 85960 CTTGATCGGATCGAGGTCGGTGATGGTCAGCGCCCACGCGACCAGCGAGCCGGCGCCGGA 85901 Query 40303 GCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGAC 40362 ||| || || || ||||| | ||| | ||| ||||| ||||||||||| || Sbjct 85900 GCCGCGGCCCGGCCCGACGGGAATGCCTTGGCTCTTTGCCCATTTGATGAAGTCGGACAC 85841 Query 40363 GACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTG 40422 || |||||||||| || | | ||| || |||| | ||| | |||| | |||| | Sbjct 85840 GATCAGGAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCCAGCTCGAAGGCGAGCCG 85781 Query 40423 CTTGCCGT 40430 |||| ||| Sbjct 85780 CTTGGCGT 85773 Score = 82.4 bits (90), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 39231 TCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGA 39290 |||||||||||||||| || ||||| |||||||| | ||| || ||||| | | | Sbjct 86927 TCTTCTTGCCCATGGCGCGGCGCAGAAGGTCGGCGTCGCCGAGCGAATAGCCCGACATCA 86868 Query 39291 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGA 39350 |||||| || | |||||| |||||||||||||||| ||| | ||| | ||||| Sbjct 86867 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCGAAGGTCTCTTTCAGGA 86808 Query 39351 T---CTCCCGCAGGGG 39363 | |||| ||| ||| Sbjct 86807 TCGGCTCCAGCACGGG 86792 >seq34751 Length=230815 Score = 134 bits (148), Expect = 4e-27 Identities = 227/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| |||||| ||| ||||| ||| ||||| ||||| Sbjct 178857 CCGAAGGTGATGATCTGGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAGCGGATC 178916 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||||||||| || || | || |||||||||||| | ||| ||||| || ||||| | Sbjct 178917 ACCTCGCCGCGCCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTT 178974 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGAT-C 40267 | || || ||||| |||||||| | || ||| | | |||||||||||||| || Sbjct 178975 CCGGATTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGGTCGGTAATGG 179034 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 | | || ||| || |||||||| || || |||| || || || || |||||| | | Sbjct 179035 TCAATGC-GTAAGCCACCAGCGAGCCTGCGCCCGAACCGCGGCCCGGCCCGACCGGAATG 179093 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 || | ||| || ||||||||| | ||||| ||||||||| || || | Sbjct 179094 CCCTCGGACTTCGCATGCTTGATGAAGTCCGAGACGATCAGGAAGTATCCCGAATAGTTC 179153 Query 40388 ATCTGGATGATCATGTCGATCTCG 40411 ||| || |||| | ||||||||| Sbjct 179154 ATCCGGGTGATGACATCGATCTCG 179177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160298316363108